Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86867 | Canola | nucleus | 80.25 | 81.76 |
| CDX99534 | Canola | nucleus | 78.4 | 79.87 |
| VIT_18s0089g01280.t01 | Wine grape | nucleus | 40.74 | 32.2 |
| AT2G21320.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.63 | 27.91 |
| AT2G31380.1 | Thale cress | nucleus | 40.12 | 27.31 |
| AT1G06040.1 | Thale cress | nucleus | 41.36 | 27.02 |
| AT4G39070.1 | Thale cress | cytosol | 38.89 | 26.03 |
| AT1G78600.2 | Thale cress | nucleus | 47.53 | 24.14 |
| AT4G38960.3 | Thale cress | cytosol | 32.72 | 23.45 |
| AT1G75540.1 | Thale cress | nucleus | 37.65 | 18.43 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EntrezGene:826615 | UniProt:A0A178UTH9 | ProteinID:AAC62805.1 | ProteinID:AEE82858.1 |
| ArrayExpress:AT4G10240 | EnsemblPlantsGene:AT4G10240 | RefSeq:AT4G10240 | TAIR:AT4G10240 | RefSeq:AT4G10240-TAIR-G | EnsemblPlants:AT4G10240.1 |
| TAIR:AT4G10240.1 | EMBL:AY122916 | ProteinID:CAB39777.1 | ProteinID:CAB78147.1 | GO:GO:0000989 | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR000315 | RefSeq:NP_192762.1 | UniProt:O82617 | ProteinID:OAO96657.1 |
| PFAM:PF00643 | PO:PO:0007611 | PO:PO:0009030 | PO:PO:0009032 | PO:PO:0025022 | PFscan:PS50119 |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 | SMART:SM00336 | UniParc:UPI00000A2F53 | InterPro:Znf_B-box | : |
Description
BBX23Bbx23 [Source:UniProtKB/TrEMBL;Acc:A0A178UTH9]
Coordinates
chr4:-:6368829..6369950
Molecular Weight (calculated)
17859.8 Da
IEP (calculated)
4.734
GRAVY (calculated)
-0.375
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKLFQ RHHRVALQKD AASATTASGA PLCDICQERK GYFFCLEDRA MLCNDCDEAI HTCNSHQRFL
101: LSGVQVSDQS LTENSECSTS FSSETYQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL SP
101: LSGVQVSDQS LTENSECSTS FSSETYQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL SP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.