Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56613 | Canola | nucleus | 89.92 | 88.07 |
| CDY19093 | Canola | nucleus | 88.24 | 87.87 |
| Bra018249.1-P | Field mustard | nucleus | 89.5 | 87.65 |
| CDY15382 | Canola | nucleus | 89.08 | 87.6 |
| Bra021734.1-P | Field mustard | nucleus | 88.24 | 87.5 |
| CDY10800 | Canola | nucleus | 88.66 | 86.83 |
| AT1G06040.1 | Thale cress | nucleus | 71.85 | 68.95 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 63.45 | 63.18 |
| PGSC0003DMT400069498 | Potato | nucleus | 58.82 | 60.09 |
| Solyc06g073180.2.1 | Tomato | nucleus | 58.82 | 60.09 |
| KRH24617 | Soybean | nucleus | 58.4 | 58.4 |
| KRH29616 | Soybean | nucleus | 57.98 | 57.98 |
| KRH23214 | Soybean | nucleus | 57.98 | 57.74 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 53.78 | 53.78 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 56.72 | 53.15 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 53.78 | 50.0 |
| Zm00001d051018_P002 | Maize | extracellular | 52.52 | 49.41 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 52.94 | 48.46 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 52.94 | 48.46 |
| EES07119 | Sorghum | nucleus | 52.94 | 47.91 |
| Os02t0606200-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 51.26 | 45.02 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 47.06 | 44.09 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.48 | 43.8 |
| EES12431 | Sorghum | nucleus | 49.16 | 43.66 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 47.06 | 43.41 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 47.06 | 42.59 |
| AT4G10240.1 | Thale cress | nucleus | 27.31 | 40.12 |
| KRH10122 | Soybean | nucleus | 57.98 | 35.2 |
| Os04t0493000-01 | Rice | cytosol | 25.63 | 33.15 |
| AT2G21320.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.69 | 31.4 |
| AT1G78600.2 | Thale cress | nucleus | 36.13 | 26.96 |
| AT4G39070.1 | Thale cress | cytosol | 25.63 | 25.21 |
| AT4G38960.3 | Thale cress | cytosol | 23.11 | 24.34 |
| AT1G75540.1 | Thale cress | nucleus | 31.93 | 22.96 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EntrezGene:817696 | UniProt:A0A178VP39 | ProteinID:AAD26481.2 | ProteinID:AEC08540.1 |
| EMBL:AF323666 | EMBL:AF325077 | EMBL:AF370311 | ArrayExpress:AT2G31380 | EnsemblPlantsGene:AT2G31380 | RefSeq:AT2G31380 |
| TAIR:AT2G31380 | RefSeq:AT2G31380-TAIR-G | EnsemblPlants:AT2G31380.1 | TAIR:AT2G31380.1 | EMBL:AY063097 | GO:GO:0000989 |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010100 | GO:GO:0046872 | InterPro:IPR000315 | RefSeq:NP_565722.1 | ProteinID:OAP07241.1 |
| PFAM:PF00643 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50119 |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 | UniProt:Q9SID1 | SMART:SM00336 | Symbol:STH | UniParc:UPI00001360F9 |
| InterPro:Znf_B-box | : | : | : | : | : |
Description
BBX25B-box zinc finger protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9SID1]
Coordinates
chr2:+:13381767..13383470
Molecular Weight (calculated)
26658.2 Da
IEP (calculated)
4.666
GRAVY (calculated)
-0.498
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCEK APATLICCAD EAALCAKCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.