Factsheet for VIT_05s0102g00750.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01920.t01
VIT_02s0012g01930.t01
VIT_12s0059g01420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06040.1	VIT_02s0012g01920.t01	AT1G32230.1	11018516
AT1G06040.1	VIT_02s0012g01930.t01	AT1G32230.1	11018516
AT1G06040.1	VIT_02s0012g01920.t01	AT1G32230.1	19548978
AT1G06040.1	VIT_02s0012g01930.t01	AT1G32230.1	19548978
AT1G06040.1	VIT_12s0059g01420.t01	AT2G32950.1	11226162
AT2G31380.1	VIT_12s0059g01420.t01	AT2G32950.1	11226162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23214	Soybean	nucleus	75.73	75.73
PGSC0003DMT400069498	Potato	nucleus	71.97	73.82
Solyc06g073180.2.1	Tomato	nucleus	71.55	73.39
KRH29616	Soybean	nucleus	72.38	72.69
KRH24617	Soybean	nucleus	71.97	72.27
Bra015469.1-P	Field mustard	nucleus	66.11	65.02
CDX86539	Canola	nucleus	64.02	63.49
AT2G31380.1	Thale cress	nucleus	63.18	63.45
CDY06194	Canola	nucleus	61.92	63.25
Bra032441.1-P	Field mustard	nucleus	61.92	63.25
CDY09992	Canola	nucleus	61.92	62.98
GSMUA_Achr9P02360_001	Banana	cytosol	62.34	62.6
CDY15558	Canola	nucleus	62.76	62.5
Bra030635.1-P	Field mustard	nucleus	62.76	62.24
CDY56613	Canola	nucleus	63.18	62.14
Bra021734.1-P	Field mustard	nucleus	61.92	61.67
CDY19093	Canola	nucleus	61.51	61.51
CDY10800	Canola	nucleus	62.34	61.32
Bra018249.1-P	Field mustard	nucleus	62.34	61.32
AT1G06040.1	Thale cress	nucleus	63.18	60.89
CDY15382	Canola	nucleus	61.09	60.33
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	61.51	57.87
TraesCS6A01G216400.1	Wheat	extracellular	59.83	55.86
Zm00001d051018_P002	Maize	extracellular	58.16	54.94
EES07119	Sorghum	nucleus	59.41	53.99
TraesCS6B01G246500.1	Wheat	extracellular	58.58	53.85
TraesCS6D01G199200.1	Wheat	extracellular	58.58	53.85
TraesCS2A01G348900.1	Wheat	nucleus	54.39	51.18
TraesCS2D01G347300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	54.39	50.39
Os02t0606200-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	56.9	50.18
TraesCS2B01G367300.2	Wheat	nucleus	53.97	50.0
EES12431	Sorghum	nucleus	55.65	49.63
TraesCS2A01G366100.2	Wheat	nucleus	53.56	48.67
KRH10122	Soybean	nucleus	75.73	46.17
Os04t0493000-01	Rice	cytosol	33.47	43.48
VIT_18s0089g01280.t01	Wine grape	nucleus	30.96	36.1
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	38.91	31.74
VIT_04s0023g03030.t01	Wine grape	cytosol	22.59	29.35
VIT_03s0038g00690.t01	Wine grape	cytosol	23.85	27.14
VIT_18s0001g13520.t01	Wine grape	nucleus	33.47	26.4
VIT_03s0038g00340.t01	Wine grape	nucleus	31.8	25.17

Protein Annotations

EntrezGene:100257595	wikigene:100257595	MapMan:15.5.1.1	Gene3D:3.30.40.200	ProteinID:CBI36692	ProteinID:CBI36692.3
UniProt:D7U1S6	EMBL:FN596500	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	GO:GO:0046872	InterPro:IPR000315	EntrezGene:LOC100257595	wikigene:LOC100257595
PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF8	SMART:SM00336	TIGR:TC53438
TIGR:TC60549	UniParc:UPI00015CC757	ArrayExpress:VIT_05s0102g00750	EnsemblPlantsGene:VIT_05s0102g00750	EnsemblPlants:VIT_05s0102g00750.t01	unigene:Vvi.6881
RefSeq:XP_002268700	RefSeq:XP_002268700.1	InterPro:Znf_B-box	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:22643863..22646810

Molecular Weight (calculated)

26445.3 Da

IEP (calculated)

4.614

GRAVY (calculated)

-0.387

Length

239 amino acids

Sequence
(BLAST)

001: MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPPCDIC QEKAAFIFCV EDRALFCRDC DEPIHSAGNL AANHQRFLAT
101: GIRVALSSKC AKETDKSSSE PPPNQNSQQI TMKMPPQQAP NFTSSSWAVD DLLQFSDFES SDKNKQLEFG ELEWLTEMGI FGDQVPQEAM AAAEVPQLPI
201: SQPSYGASYR ATKSSMPYKR PRIEILDDED EHFTVPDLG

Best Arabidopsis Sequence Match ( AT1G06040.1 )
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG

Arabidopsis Description

BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.