Factsheet for Bra010713.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90306	Canola	nucleus	100.0	100.0
AT4G39070.1	Thale cress	cytosol	88.38	88.02
Bra011879.1-P	Field mustard	nucleus	86.72	87.45
Solyc01g110180.2.1	Tomato	nucleus	45.64	54.19
Zm00001d017412_P001	Maize	nucleus	30.29	51.41
GSMUA_Achr9P20930_001	Banana	cytosol	37.76	48.92
GSMUA_Achr11P...	Banana	cytosol	39.83	48.48
GSMUA_Achr11P...	Banana	nucleus	36.93	48.11
KRH51476	Soybean	nucleus	46.06	47.64
GSMUA_Achr4P05180_001	Banana	cytosol	39.0	46.31
PGSC0003DMT400079507	Potato	nucleus	46.47	44.44
Zm00001d002806_P001	Maize	nucleus	40.66	37.98
Zm00001d025957_P001	Maize	nucleus	40.25	37.89
TraesCS6B01G285200.1	Wheat	nucleus	37.34	37.82
OQU82040	Sorghum	nucleus	41.08	37.36
TraesCS6A01G239300.1	Wheat	nucleus	36.51	37.29
TraesCS6D01G221700.1	Wheat	nucleus	36.51	36.97
Os04t0540200-01	Rice	nucleus	38.17	36.8
VIT_03s0038g00340.t01	Wine grape	nucleus	46.06	36.76
GSMUA_AchrUn_...	Banana	nucleus	41.91	36.33
TraesCS2D01G386300.1	Wheat	nucleus	39.0	35.88
KRH29378	Soybean	nucleus	42.74	35.76
Bra008204.1-P	Field mustard	nucleus	44.81	35.76
TraesCS2A01G388500.1	Wheat	nucleus	38.17	35.66
GSMUA_Achr11P...	Banana	nucleus	38.59	35.5
KRH60788	Soybean	nucleus	46.47	35.11
Bra003748.1-P	Field mustard	nucleus	45.64	34.48
TraesCS2B01G406600.2	Wheat	nucleus	37.34	33.96
Bra015835.1-P	Field mustard	nucleus	45.23	33.96
Zm00001d051309_P001	Maize	nucleus	39.0	33.94
Os02t0646200-01	Rice	nucleus	37.76	33.83
EES07539	Sorghum	nucleus	39.42	32.2
HORVU7Hr1G091180.1	Barley	nucleus	36.51	32.0
HORVU2Hr1G092460.9	Barley	cytosol, mitochondrion, nucleus	36.93	31.23
TraesCS7D01G379900.1	Wheat	nucleus	36.51	30.88
Bra032441.1-P	Field mustard	nucleus	29.46	30.34
KRH24393	Soybean	nucleus	25.73	30.24
Zm00001d036418_P001	Maize	nucleus	32.78	29.37
Bra015469.1-P	Field mustard	nucleus	29.46	29.22
Bra030635.1-P	Field mustard	nucleus	29.05	29.05
TraesCS7B01G286300.1	Wheat	nucleus	37.34	28.94
Bra010718.1-P	Field mustard	cytosol	21.58	28.89
EER90373	Sorghum	cytosol	36.51	28.85
TraesCS7A01G383400.3	Wheat	nucleus	37.34	28.75
Os06t0713000-01	Rice	nucleus	36.51	28.57
Bra033588.1-P	Field mustard	cytosol	21.16	28.02
Bra031180.1-P	Field mustard	cytosol	21.16	27.13
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	41.08	25.85
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	36.93	25.07
Bra021734.1-P	Field mustard	nucleus	24.9	25.0
Bra018249.1-P	Field mustard	nucleus	24.9	24.69
Bra003640.1-P	Field mustard	nucleus	29.46	24.65
Bra035051.1-P	Field mustard	nucleus	29.46	24.32
GSMUA_Achr1P07740_001	Banana	nucleus	39.42	24.23
Bra008371.1-P	Field mustard	nucleus	28.63	23.71

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EnsemblPlantsGene:Bra010713	EnsemblPlants:Bra010713.1	EnsemblPlants:Bra010713.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008270	GO:GO:0009628
GO:GO:0009719	GO:GO:0009741	GO:GO:0009791	GO:GO:0009987	GO:GO:0010200	GO:GO:0043565
GO:GO:0046872	GO:GO:0080167	GO:GO:1900458	GO:GO:2000306	InterPro:IPR000315	UniProt:M4D2L0
PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF18	SMART:SM00336	UniParc:UPI0002546973
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

AT4G39070 (E=3e-104) | zinc finger (B-box type) family protein

Coordinates

chrA08:+:16079852..16081171

Molecular Weight (calculated)

26720.0 Da

IEP (calculated)

6.422

GRAVY (calculated)

-0.516

Length

241 amino acids

Sequence
(BLAST)

001: MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHQRFSLTSP TFKDAPLCDI CGKRRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS TYPKASNSIS TTVLSRAKTR PKSVSGEVPS SASSEVFASS PSTTTSNYYY GLDENYHQVS DSGSGSGGTG SISEYLMETL PGWRVEDLLE
201: HPSCVSHEDN IISTNNNESY MVYDGSLQYH HQGFWEQKPF S

Best Arabidopsis Sequence Match ( AT4G39070.1 )
(BLAST)

001: MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS

Arabidopsis Description

BBX20B-box zinc finger protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q0IGM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.