Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G028150.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 50.2 | 57.21 |
| TraesCS6A01G143900.1 | Wheat | nucleus | 48.98 | 56.07 |
| TraesCS6B01G172300.1 | Wheat | nucleus | 48.98 | 56.07 |
| TraesCS6D01G133100.1 | Wheat | nucleus | 48.16 | 55.14 |
| Os12t0209200-01 | Rice | cytosol | 46.94 | 54.76 |
| OQU82040 | Sorghum | nucleus | 28.98 | 26.79 |
| EES17867 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 35.92 | 26.19 |
| EES12431 | Sorghum | nucleus | 28.57 | 26.12 |
| EES07539 | Sorghum | nucleus | 30.61 | 25.42 |
| EER97079 | Sorghum | cytosol | 21.63 | 25.12 |
| EES02283 | Sorghum | nucleus | 35.51 | 24.72 |
| EES07119 | Sorghum | nucleus | 26.12 | 24.33 |
| KXG19323 | Sorghum | nucleus | 35.51 | 23.2 |
| EER90373 | Sorghum | cytosol | 23.27 | 18.69 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EntrezGene:8054973 | UniProt:C5YTM3 | EnsemblPlants:EES15831 | ProteinID:EES15831 |
| ProteinID:EES15831.1 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR000315 | PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF4 | SMART:SM00336 | EnsemblPlantsGene:SORBI_3008G073400 | UniParc:UPI0001A88072 | RefSeq:XP_002441993.1 | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:10177621..10179750
Molecular Weight (calculated)
24676.2 Da
IEP (calculated)
4.885
GRAVY (calculated)
-0.293
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIGCDACER AEAAVLCCAD EAALCRSCDA AVHSANKLAA RHHRVALLPS STAHPPSSTS PIADDGSGSG GGGGDGHPAC DICQEKTGYF FCLEDRALLC
101: RPCDVAVHAA GVHVSSHRRF LITGVRVGDV ESLSHGVPGS DGGASPSTTS SGNGSSNAPG SSSGGGNPTT TTTTTTMPDQ VRPSSSSSIR ATAATTAEGS
201: PGQWQQWLWS DFLADDVGGG GGVDMEEECC HAELSEPGSS GLTRS
101: RPCDVAVHAA GVHVSSHRRF LITGVRVGDV ESLSHGVPGS DGGASPSTTS SGNGSSNAPG SSSGGGNPTT TTTTTTMPDQ VRPSSSSSIR ATAATTAEGS
201: PGQWQQWLWS DFLADDVGGG GGVDMEEECC HAELSEPGSS GLTRS
001: MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKLFQ RHHRVALQKD AASATTASGA PLCDICQERK GYFFCLEDRA MLCNDCDEAI HTCNSHQRFL
101: LSGVQVSDQS LTENSECSTS FSSETYQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL SP
101: LSGVQVSDQS LTENSECSTS FSSETYQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL SP
Arabidopsis Description
BBX23Bbx23 [Source:UniProtKB/TrEMBL;Acc:A0A178UTH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.