Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G133100.1 | Wheat | nucleus | 95.33 | 95.33 |
| HORVU6Hr1G028150.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 95.33 | 94.88 |
| TraesCS6B01G172300.1 | Wheat | nucleus | 94.86 | 94.86 |
| Os12t0209200-01 | Rice | cytosol | 62.15 | 63.33 |
| EES15831 | Sorghum | nucleus | 56.07 | 48.98 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 31.78 | 28.81 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 31.31 | 26.17 |
| TraesCS7A01G108400.1 | Wheat | nucleus | 42.52 | 25.35 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 30.37 | 25.19 |
| TraesCS5A01G317100.1 | Wheat | cytosol | 24.77 | 25.12 |
| TraesCS3A01G139300.1 | Wheat | nucleus | 40.65 | 24.93 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 29.44 | 24.8 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 29.91 | 24.33 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 27.57 | 18.85 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G143900.1 | EnsemblPlantsGene:TraesCS6A01G143900 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31832 |
| PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:15.5.1.1 |
Description
No Description!
Coordinates
chr6A:-:121616338..121619776
Molecular Weight (calculated)
22148.4 Da
IEP (calculated)
4.519
GRAVY (calculated)
-0.304
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMKIGCDAC GQAEAAVLCC ADEAALCRRC DAAVHSANKL AGRHHRVALL SSTPAGSSSP GAGDDGGSHP ACDICQEKTG YFFCVEDRAL LCRSCDVAIH
101: TATPNASTHR RFLITGVRVG ADQDHIGDVS GATVGSPSNS SANGSNNMPT SENFAIANDQ RSEEGVGLIG GGEDDIGQQQ QWPWSDIFAD DGVGMDQHQC
201: YPGFSEPGSS SLTG
101: TATPNASTHR RFLITGVRVG ADQDHIGDVS GATVGSPSNS SANGSNNMPT SENFAIANDQ RSEEGVGLIG GGEDDIGQQQ QWPWSDIFAD DGVGMDQHQC
201: YPGFSEPGSS SLTG
001: MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKLFQ RHHRVALQKD AASATTASGA PLCDICQERK GYFFCLEDRA MLCNDCDEAI HTCNSHQRFL
101: LSGVQVSDQS LTENSECSTS FSSETYQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL SP
101: LSGVQVSDQS LTENSECSTS FSSETYQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL SP
Arabidopsis Description
BBX23Bbx23 [Source:UniProtKB/TrEMBL;Acc:A0A178UTH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.