Factsheet for Solyc01g110370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008044	Potato	cytosol	84.23	95.75
Solyc02g084420.2.1	Tomato	cytosol	31.95	87.5
VIT_03s0038g00690.t01	Wine grape	cytosol	61.41	70.48
VIT_04s0023g03030.t01	Wine grape	cytosol	52.7	69.02
Bra010718.1-P	Field mustard	cytosol	51.04	68.33
CDX82018	Canola	cytosol	52.7	67.91
CDX72726	Canola	cytosol	50.21	67.6
Bra033588.1-P	Field mustard	cytosol	51.04	67.58
CDY12111	Canola	cytosol	50.21	67.22
CDX90301	Canola	cytosol	50.21	67.22
Bra031180.1-P	Field mustard	cytosol	52.28	67.02
AT2G21320.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	46.89	65.7
KRH29344	Soybean	nucleus	57.68	65.57
KRH24373	Soybean	nucleus	56.43	64.15
CDY22402	Canola	plastid	41.08	61.49
Os09t0527900-01	Rice	cytosol	51.87	59.24
Zm00001d021278_P001	Maize	cytosol	50.62	59.22
EER97079	Sorghum	cytosol	51.04	58.29
TraesCS5A01G317100.1	Wheat	cytosol	48.55	55.45
TraesCS5B01G317700.1	Wheat	cytosol	48.55	55.45
TraesCS5D01G323400.1	Wheat	cytosol	48.13	54.98
AT4G38960.3	Thale cress	cytosol	51.04	54.42
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	48.13	42.18
Zm00001d006198_P001	Maize	cytosol	40.66	38.58
GSMUA_Achr6P17960_001	Banana	cytosol	30.29	34.11
Solyc01g110180.2.1	Tomato	nucleus	18.67	22.17
Solyc06g073180.2.1	Tomato	nucleus	21.16	21.89
Solyc07g062160.2.1	Tomato	nucleus	26.14	21.14
Solyc04g081020.2.1	Tomato	nucleus	24.9	20.07
Solyc12g005420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	22.41	19.15
Solyc12g089240.1.1	Tomato	nucleus	21.99	16.11

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	InterPro:IPR000315	UniProt:K4B3Q0	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF5	SMART:SM00336	EnsemblPlantsGene:Solyc01g110370.2	EnsemblPlants:Solyc01g110370.2.1	UniParc:UPI0002768FA3
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:97087414..97092095

Molecular Weight (calculated)

26878.0 Da

IEP (calculated)

5.173

GRAVY (calculated)

-0.447

Length

241 amino acids

Sequence
(BLAST)

001: MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SKIQRCDICE NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLIRQR
101: IEFPGDKLGP SNEQGLPSTE QGDVRRETAQ PFKLPMIDNH QPNRETAMTA VENNVNNSVK VENELIDLNS RPQRMHGQTS NNQEQVMDML GGSNHESVGV
201: VPDGPFKREP EKCELLPFQI SNLNYELELP APAEFYAMSK L

Best Arabidopsis Sequence Match ( AT4G38960.1 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.