Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11657 | Canola | nucleus | 99.66 | 99.66 |
| CDX87448 | Canola | nucleus | 93.56 | 94.52 |
| CDY14607 | Canola | nucleus | 88.14 | 89.35 |
| CDX79268 | Canola | nucleus | 85.42 | 87.5 |
| CDY69214 | Canola | nucleus | 84.75 | 86.81 |
| CDY26870 | Canola | nucleus | 87.46 | 86.0 |
| AT1G78600.2 | Thale cress | nucleus | 85.42 | 79.0 |
| HORVU7Hr1G023060.1 | Barley | cytosol, mitochondrion, nucleus | 18.31 | 75.0 |
| PGSC0003DMT400018196 | Potato | nucleus | 56.27 | 55.7 |
| Solyc07g062160.2.1 | Tomato | nucleus | 56.27 | 55.7 |
| VIT_19s0014g00350.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 54.24 | 54.61 |
| KRH21881 | Soybean | nucleus | 53.56 | 53.92 |
| CDX99534 | Canola | nucleus | 26.78 | 49.69 |
| PGSC0003DMT400048964 | Potato | nucleus | 50.17 | 49.5 |
| Solyc12g005420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.12 | 49.29 |
| CDX86867 | Canola | nucleus | 26.1 | 48.43 |
| GSMUA_Achr6P21590_001 | Banana | nucleus | 48.47 | 47.67 |
| GSMUA_Achr6P14750_001 | Banana | nucleus | 47.46 | 46.36 |
| KRH27404 | Soybean | extracellular, vacuole | 53.9 | 42.51 |
| TraesCS7B01G006400.1 | Wheat | nucleus | 45.08 | 39.35 |
| TraesCS7A01G108400.1 | Wheat | nucleus | 45.76 | 37.6 |
| TraesCS7D01G103300.1 | Wheat | nucleus | 45.42 | 36.91 |
| Os06t0152200-01 | Rice | nucleus | 44.75 | 36.67 |
| CDY19093 | Canola | nucleus | 29.49 | 36.4 |
| CDX86539 | Canola | nucleus | 29.49 | 36.1 |
| CDY15382 | Canola | nucleus | 29.49 | 35.95 |
| KXG19323 | Sorghum | nucleus | 45.42 | 35.73 |
| CDY15558 | Canola | nucleus | 28.81 | 35.42 |
| CDY56613 | Canola | nucleus | 29.15 | 35.39 |
| CDY10800 | Canola | nucleus | 29.15 | 35.39 |
| CDY09992 | Canola | nucleus | 28.14 | 35.32 |
| CDY06194 | Canola | nucleus | 27.8 | 35.04 |
| Zm00001d036214_P001 | Maize | nucleus | 44.75 | 34.2 |
| CDX72726 | Canola | cytosol | 20.68 | 34.08 |
| CDX90301 | Canola | cytosol | 20.34 | 33.33 |
| CDY12111 | Canola | cytosol | 20.34 | 33.33 |
| CDX82018 | Canola | cytosol | 21.02 | 33.16 |
| CDY41957 | Canola | nucleus | 23.73 | 33.02 |
| Zm00001d045323_P004 | Maize | nucleus | 45.76 | 31.99 |
| HORVU7Hr1G023100.2 | Barley | plastid | 43.39 | 31.84 |
| CDY42602 | Canola | nucleus | 24.07 | 30.34 |
| CDY12117 | Canola | nucleus | 24.41 | 29.75 |
| CDX90306 | Canola | nucleus | 24.07 | 29.46 |
| CDY47514 | Canola | nucleus | 30.17 | 27.73 |
| CDY13564 | Canola | nucleus | 28.47 | 27.72 |
| CDY39040 | Canola | nucleus | 27.12 | 27.21 |
| CDX73178 | Canola | nucleus | 29.15 | 26.71 |
| CDX85903 | Canola | nucleus | 28.81 | 26.65 |
| CDX68124 | Canola | nucleus | 28.81 | 26.65 |
| CDY22402 | Canola | plastid | 14.24 | 26.09 |
Protein Annotations
| EnsemblPlants:CDX88458 | EnsemblPlantsGene:GSBRNA2T00148004001 | Gene3D:3.30.40.200 | GO:A0A078DMK4 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF31 | PFAM:PF00643 | PFscan:PS50119 | ProteinID:CDX88458 | ProteinID:CDX88458.1 |
| SEG:seg | SMART:SM00336 | UniParc:UPI0004EDB7B9 | MapMan:15.5.1.1 | : | : |
Description
BnaC06g39020D
Coordinates
chrLK031855:+:1124292..1125751
Molecular Weight (calculated)
32385.7 Da
IEP (calculated)
6.498
GRAVY (calculated)
-0.571
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCNVCEA AEAAVLCCAD EAALCWACDE KVHAANKLAG KHQRVPLSVS SSSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPR VSAHQRFLLT
101: GIRVGLECTD TGPSTKPSPS NDDKTNEAKK VTLPTSEPQK MDFDHHHHQQ VVLQETNVSD HISTKLPFAS SGSAAGSIPQ WQIEEIFRLT DFDQSYEYME
201: INGSSKADTS RRGDSDSSSM MRSGGEEDGE DNNNYLGSET SWAVPQIPSP PTASGLNWPK HFNHHSAVFV PDIASSTPYT GSSPNQRVGK RRRRF
101: GIRVGLECTD TGPSTKPSPS NDDKTNEAKK VTLPTSEPQK MDFDHHHHQQ VVLQETNVSD HISTKLPFAS SGSAAGSIPQ WQIEEIFRLT DFDQSYEYME
201: INGSSKADTS RRGDSDSSSM MRSGGEEDGE DNNNYLGSET SWAVPQIPSP PTASGLNWPK HFNHHSAVFV PDIASSTPYT GSSPNQRVGK RRRRF
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
Arabidopsis Description
LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.