Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69214 | Canola | nucleus | 94.1 | 94.1 |
| CDX87448 | Canola | nucleus | 87.85 | 86.64 |
| CDX88458 | Canola | nucleus | 87.5 | 85.42 |
| CDY14607 | Canola | nucleus | 86.11 | 85.22 |
| CDY11657 | Canola | nucleus | 87.15 | 85.08 |
| CDY26870 | Canola | nucleus | 86.11 | 82.67 |
| AT1G78600.2 | Thale cress | nucleus | 83.33 | 75.24 |
| HORVU7Hr1G023060.1 | Barley | cytosol, mitochondrion, nucleus | 18.06 | 72.22 |
| VIT_19s0014g00350.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 55.9 | 54.95 |
| Solyc07g062160.2.1 | Tomato | nucleus | 56.25 | 54.36 |
| PGSC0003DMT400018196 | Potato | nucleus | 55.9 | 54.03 |
| KRH21881 | Soybean | nucleus | 53.82 | 52.9 |
| Solyc12g005420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.57 | 48.58 |
| PGSC0003DMT400048964 | Potato | nucleus | 50.35 | 48.49 |
| CDX99534 | Canola | nucleus | 26.74 | 48.43 |
| CDX86867 | Canola | nucleus | 26.04 | 47.17 |
| GSMUA_Achr6P21590_001 | Banana | nucleus | 48.61 | 46.67 |
| GSMUA_Achr6P14750_001 | Banana | nucleus | 47.57 | 45.36 |
| KRH27404 | Soybean | extracellular, vacuole | 53.82 | 41.44 |
| TraesCS7B01G006400.1 | Wheat | nucleus | 44.79 | 38.17 |
| Os06t0152200-01 | Rice | nucleus | 45.49 | 36.39 |
| TraesCS7A01G108400.1 | Wheat | nucleus | 45.14 | 36.21 |
| CDX86539 | Canola | nucleus | 30.21 | 36.1 |
| TraesCS7D01G103300.1 | Wheat | nucleus | 44.79 | 35.54 |
| CDY15558 | Canola | nucleus | 29.51 | 35.42 |
| CDY09992 | Canola | nucleus | 28.82 | 35.32 |
| CDY19093 | Canola | nucleus | 29.17 | 35.15 |
| CDY06194 | Canola | nucleus | 28.47 | 35.04 |
| CDY56613 | Canola | nucleus | 29.51 | 34.98 |
| CDY10800 | Canola | nucleus | 29.51 | 34.98 |
| KXG19323 | Sorghum | nucleus | 45.49 | 34.93 |
| CDY15382 | Canola | nucleus | 29.17 | 34.71 |
| CDX72726 | Canola | cytosol | 21.18 | 34.08 |
| Zm00001d036214_P001 | Maize | nucleus | 45.14 | 33.68 |
| CDX82018 | Canola | cytosol | 21.53 | 33.16 |
| CDY41957 | Canola | nucleus | 24.31 | 33.02 |
| CDY12111 | Canola | cytosol | 20.49 | 32.78 |
| CDX90301 | Canola | cytosol | 20.49 | 32.78 |
| Zm00001d045323_P004 | Maize | nucleus | 46.53 | 31.75 |
| CDY42602 | Canola | nucleus | 25.35 | 31.2 |
| HORVU7Hr1G023100.2 | Barley | plastid | 43.4 | 31.09 |
| CDY12117 | Canola | nucleus | 25.35 | 30.17 |
| CDX90306 | Canola | nucleus | 25.0 | 29.88 |
| CDY13564 | Canola | nucleus | 29.51 | 28.05 |
| CDY39040 | Canola | nucleus | 28.47 | 27.89 |
| CDY47514 | Canola | nucleus | 30.9 | 27.73 |
| CDX85903 | Canola | nucleus | 29.86 | 26.96 |
| CDX68124 | Canola | nucleus | 29.86 | 26.96 |
| CDY22402 | Canola | plastid | 14.93 | 26.71 |
| CDX73178 | Canola | nucleus | 29.86 | 26.71 |
Protein Annotations
| EnsemblPlants:CDX79268 | EnsemblPlantsGene:GSBRNA2T00131912001 | Gene3D:3.30.40.200 | GO:A0A078CVQ9 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF31 | PFAM:PF00643 | PFscan:PS50119 | ProteinID:CDX79268 | ProteinID:CDX79268.1 |
| SEG:seg | SMART:SM00336 | UniParc:UPI0004EB4C52 | MapMan:15.5.1.1 | : | : |
Description
BnaC06g20350D
Coordinates
chrLK031817:+:904781..906103
Molecular Weight (calculated)
31211.1 Da
IEP (calculated)
5.942
GRAVY (calculated)
-0.659
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCNVCET AEAAVLCCAD EAALCLACDE KVHAANKLAG KHQRVPLSVS SSSKPKCDIC QEATGFFFCL QDRALLCRKC DVSIHTVNPH VSAHQRFLLT
101: GIRVGLESTT DTGPSTPSND DKTNERKPPT SEPQKMDFDD HNHQVGLPET KVSDHISTKL PIASSGSAAT GSIPQWQIDE IFGLTDFDQS YEYMENNGSS
201: KADTSRRGDS DNSSMMRSGE EDGEDNSNCL GGGETSWAVP QIQSPPTASG LNWPRHSNHH SMFVPDISSS ALNTGSSPNQ RVGKRRRS
101: GIRVGLESTT DTGPSTPSND DKTNERKPPT SEPQKMDFDD HNHQVGLPET KVSDHISTKL PIASSGSAAT GSIPQWQIDE IFGLTDFDQS YEYMENNGSS
201: KADTSRRGDS DNSSMMRSGE EDGEDNSNCL GGGETSWAVP QIQSPPTASG LNWPRHSNHH SMFVPDISSS ALNTGSSPNQ RVGKRRRS
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
Arabidopsis Description
LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.