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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, golgi, nucleus, cytosol

Predictor Summary:
  • golgi 1
  • mitochondrion 2
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, mitochondrion, nucleus
Any Predictor:cytosol, golgi, mitochondrion, nucleus
MultiLoc:golgi
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3A01G284700.2
TraesCS3B01G318600.1
TraesCS3D01G284500.2
TraesCS4A01G122500.2
TraesCS4B01G182400.1
TraesCS4D01G183400.1
TraesCS6A01G223700.1
TraesCS6A01G273000.2
TraesCS6A01G326100.1
TraesCS6B01G257600.2
TraesCS6B01G300400.1
TraesCS6B01G356400.1
TraesCS6D01G211700.1
TraesCS6D01G253000.1
TraesCS6D01G305800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04400.1 TraesCS6A01G223700.1 AT1G04400.1 15805487
AT1G04400.1 TraesCS6B01G257600.2 AT1G04400.1 15805487
AT1G04400.1 TraesCS6D01G211700.1 AT1G04400.1 15805487
AT1G04400.1 TraesCS3A01G284700.2 AT1G53090.1 22739826
AT1G04400.1 TraesCS3B01G318600.1 AT1G53090.1 22739826
AT1G04400.1 TraesCS3D01G284500.2 AT1G53090.1 22739826
AT1G04400.1 TraesCS4A01G122500.2 AT2G18790.1 11089975
AT1G04400.1 TraesCS4B01G182400.1 AT2G18790.1 11089975
AT1G04400.1 TraesCS4D01G183400.1 AT2G18790.1 11089975
AT1G04400.1 TraesCS6A01G326100.1 AT2G32950.1 11509693
AT1G04400.1 TraesCS6B01G356400.1 AT2G32950.1 11509693
AT1G04400.1 TraesCS6D01G305800.1 AT2G32950.1 11509693
AT1G04400.1 TraesCS6A01G326100.1 AT2G32950.1 22739826
AT1G04400.1 TraesCS6B01G356400.1 AT2G32950.1 22739826
AT1G04400.1 TraesCS6D01G305800.1 AT2G32950.1 22739826
AT1G04400.1 TraesCS6A01G273000.2 AT4G34530.1 22739826
AT1G04400.1 TraesCS6B01G300400.1 AT4G34530.1 22739826
AT1G04400.1 TraesCS6D01G253000.1 AT4G34530.1 22739826
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G257600.2 Wheat cytosol 95.56 96.0
TraesCS6A01G223700.1 Wheat cytosol, golgi, mitochondrion, nucleus 95.56 95.56
HORVU6Hr1G058740.2 Barley cytosol 93.42 92.99
Os02t0625000-01 Rice cytosol 77.95 78.19
EER88355 Sorghum mitochondrion 75.34 75.23
Zm00001d045944_P007 Maize cytosol 74.58 74.46
CDX89827 Canola cytosol, mitochondrion 41.5 62.44
GSMUA_Achr5P18570_001 Banana cytosol 62.79 61.29
GSMUA_AchrUn_... Banana cytosol, nucleus, peroxisome 60.03 59.76
KRH13218 Soybean extracellular 7.66 59.52
KRG92422 Soybean cytosol 56.97 58.68
VIT_05s0049g00960.t01 Wine grape cytosol 57.43 58.05
CDY18229 Canola cytosol, mitochondrion 51.15 57.99
KRH69122 Soybean cytosol 53.14 57.83
Bra015313.1-P Field mustard cytosol 51.0 57.71
KRH34384 Soybean cytosol 56.66 57.63
Solyc09g090100.2.1 Tomato cytosol 55.59 57.17
PGSC0003DMT400044219 Potato cytosol 56.2 56.72
AT1G04400.1 Thale cress cytosol 52.68 56.21
CDX86636 Canola cytosol 51.91 54.77
Bra030568.1-P Field mustard cytosol 51.76 54.6
CDY15503 Canola cytosol 51.61 54.27
TraesCS2D01G317500.1 Wheat cytosol 48.39 45.4
TraesCS6D01G187200.1 Wheat cytosol 47.63 44.56
TraesCS6D01G167100.1 Wheat plastid 21.9 26.24
TraesCS7D01G476200.1 Wheat plastid 20.52 22.45
TraesCS7D01G334900.2 Wheat plastid 10.57 15.47
Protein Annotations
Gene3D:1.10.579.10Gene3D:1.25.40.80MapMan:26.1.2.1.1Gene3D:3.40.50.620InterPro:Crypto/Photolyase_FAD-like_sfInterPro:Crypto/Photolyase_N_sf
InterPro:Cryptochr/Photolyase_FAD-bdInterPro:Cryptochrome/DNA_photolyase_1InterPro:Cryptochrome_plnInterPro:DNA_photolyase_1_CS_CInterPro:DNA_photolyase_NGO:GO:0000003
GO:GO:0000166GO:GO:0003674GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005737
GO:GO:0005773GO:GO:0006139GO:GO:0006325GO:GO:0006338GO:GO:0006950GO:GO:0007154
GO:GO:0007165GO:GO:0007275GO:GO:0007623GO:GO:0008150GO:GO:0008152GO:GO:0009414
GO:GO:0009416GO:GO:0009605GO:GO:0009606GO:GO:0009607GO:GO:0009628GO:GO:0009637
GO:GO:0009638GO:GO:0009646GO:GO:0009653GO:GO:0009719GO:GO:0009785GO:GO:0009791
GO:GO:0009882GO:GO:0009908GO:GO:0009909GO:GO:0009911GO:GO:0009987GO:GO:0010075
GO:GO:0010118GO:GO:0010244GO:GO:0010617GO:GO:0016043GO:GO:0016604GO:GO:0019725
GO:GO:0038023GO:GO:0040007GO:GO:0042752GO:GO:0042802GO:GO:0048574GO:GO:0051607
GO:GO:0071949GO:GO:0072387GO:GO:1901371GO:GO:1902347GO:GO:2000028GO:GO:2000379
InterPro:IPR006050InterPro:IPR014729PFAM:PF00875PFAM:PF03441PRINTS:PR00147ScanProsite:PS00394
PFscan:PS51645PANTHER:PTHR11455PANTHER:PTHR11455:SF44InterPro:Rossmann-like_a/b/a_foldSUPFAM:SSF48173SUPFAM:SSF52425
TIGRFAMs:TIGR02766EnsemblPlantsGene:TraesCS6D01G211700EnsemblPlants:TraesCS6D01G211700.1SEG:seg::
Description
No Description!
Coordinates
chr6D:+:299050257..299055055
Molecular Weight (calculated)
73647.3 Da
IEP (calculated)
5.350
GRAVY (calculated)
-0.351
Length
653 amino acids
Sequence
(BLAST)
001: MGRSERTVVW FRRDLRIDDN PALAAAARDG AVLPVFIWCP AEEGRFYPGR CSRWWLKESL AHLARSLEAL GCPLVLIRAQ STLAALLQCV DSIGATRVVY
101: NHLYDPISLV RDDKIKNELL GLGISMQSFN GDLLYEPWEV YDENGLAFTT FNKYWEKCMK LPIEISPFLA PWRLVPVSGI ENICSSSIDN LGLESSKDEE
201: SSNALLSRAW SPGWRNAEKT LEDFVSHGLL DYSKDRMKVT GTTTSLLSPY LHYGEVSVRK IYQLVRMQQI KWENEGKSGA GESVNLFLLS IGLREYSRYL
301: CFNFPFTHER SLLGNLKHYP WRADEDRFKS WRQGMTGYPL VDAGMRELWA TGWTHNRIRV IVSSFAVKFL LIPWTWGMKY FWDVLLDADI ESDILGWQYI
401: SGCLPDGHEL GRLDNPEVQG QKYDPDGEYV RTWIPELARM PGEWIHHPWD APSSILEVAG VELGFNYPMP IVELHMAREC LDDAISTMWQ LDTAEKLAEL
501: DGEVVEDNLS HIKSFDVPKV VLKELSPSAP RCDQKVPTDN GRNLELQPKE LKGTDKQTIC VNVIKASKME DSGSMANSPI SRKRSSSGSV FNVPSYSSSV
601: EVRSQNQHPG GYSVGSSGYI VQNAERNCVG KAEDDDSADS CTNTSRASKR PAA
Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)
001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK
Arabidopsis Description
CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.