Factsheet for Bra030568.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001650.1-P
Bra005541.1-P
Bra011540.1-P
Bra015313.1-P
Bra022192.1-P
Bra030568.1-P
Bra034636.1-P
Bra038098.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04400.1	Bra015313.1-P	AT1G04400.1	15805487
AT1G04400.1	Bra030568.1-P	AT1G04400.1	15805487
AT1G04400.1	Bra038098.1-P	AT1G53090.1	22739826
AT1G04400.1	Bra001650.1-P	AT2G18790.1	11089975
AT1G04400.1	Bra022192.1-P	AT2G18790.1	11089975
AT1G04400.1	Bra005541.1-P	AT2G32950.1	11509693
AT1G04400.1	Bra005541.1-P	AT2G32950.1	22739826
AT1G04400.1	Bra011540.1-P	AT4G34530.1	22739826
AT1G04400.1	Bra034636.1-P	AT4G34530.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15503	Canola	cytosol	99.35	99.03
AT1G04400.1	Thale cress	cytosol	91.44	92.48
Bra015313.1-P	Field mustard	cytosol	83.52	89.6
KRG92422	Soybean	cytosol	66.72	65.14
KRH69122	Soybean	cytosol	62.04	64.0
KRH34384	Soybean	cytosol	65.59	63.24
Solyc09g090100.2.1	Tomato	cytosol	63.17	61.57
VIT_05s0049g00960.t01	Wine grape	cytosol	64.14	61.46
PGSC0003DMT400044219	Potato	cytosol	63.65	60.9
KRH13218	Soybean	extracellular	8.08	59.52
GSMUA_Achr5P18570_001	Banana	cytosol	59.61	55.16
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	56.22	53.05
Os02t0625000-01	Rice	cytosol	54.44	51.77
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	54.6	51.76
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	54.6	51.76
TraesCS6B01G257600.2	Wheat	cytosol	54.12	51.54
HORVU6Hr1G058740.2	Barley	cytosol	54.6	51.52
EER88355	Sorghum	mitochondrion	52.99	50.15
Zm00001d045944_P007	Maize	cytosol	52.67	49.85
Bra037880.1-P	Field mustard	cytosol	51.7	47.06
Bra021122.1-P	Field mustard	cytosol	13.57	25.61
Bra036524.1-P	Field mustard	plastid	20.52	23.01
Bra009798.1-P	Field mustard	cytosol	19.87	22.53
Bra004444.1-P	Field mustard	cytosol	12.12	16.48

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	ProteinID:AAO22533	ProteinID:AAO22533.1
EMBL:AY176689	EnsemblPlantsGene:Bra030568	EnsemblPlants:Bra030568.1	EnsemblPlants:Bra030568.1-P	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674
GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785
GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	InterPro:IPR006050	InterPro:IPR014729	EMBL:KP143044
UniProt:M4EP48	PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691
PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425
TIGRFAMs:TIGR02766	UniParc:UPI0001E4293F	SEG:seg	:	:	:

Description

AT1G04400 (E=1e-313) CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization

Coordinates

chrA08:+:21280803..21283404

Molecular Weight (calculated)

70351.5 Da

IEP (calculated)

5.812

GRAVY (calculated)

-0.354

Length

619 amino acids

Sequence
(BLAST)

001: MSTNKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLTQSLKAL GSELTLIKTH NTVSAILDCV RATGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGIAVQSYN GDLLYEPWEI YCEKGKPFTN FNSYWKKCLD MSVESVVLPP PWRLIPLTAA ETVWACSLEE LGLENEAEKP
201: SNALLTRAWS PGWSNADKIL TEFIEKQLID YAKNSKKVVG NSTSLLSPYL HFGEISVRRV FQCARMKQII WARDKNGQGE ESAVLFLRGI GLRDYSRYIC
301: FNFPFTHEQS LLSHLRFFPW DADVEKFKAW RQGRTGYPLV DAGMRELWAT GWMHNRIRVI VSSFAVKFLL LPWKWGMKYF WDTLLDADLE CDIIGWQYIS
401: GSLPDGHELD RLDNPAIQGA KYDPEGEYIR QWLPELARLP TEWIHHPWDA PLTVLKASGV ELGTNYAKPI VDIDTARELL TKAISRTREA QIMIGAAPDE
501: IVADSFEALE AANTVKEHGL CPSSNDQQVP SDVRYNGSKR VKPEEEEEER EMKKLRGFNE VIREEEERGL FSTAESSSSS SVRSVFMVSH SCSLVSEGKN
601: LEGIQDSSDQ IATSLGKNG

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.