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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
MultiLoc:cytosol
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU3Hr1G068840.2
HORVU4Hr1G053400.1
HORVU6Hr1G058740.2
HORVU6Hr1G068980.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04400.1 HORVU6Hr1G058740.2 AT1G04400.1 15805487
AT1G04400.1 HORVU3Hr1G068840.2 AT1G53090.1 22739826
AT1G04400.1 HORVU4Hr1G053400.1 AT2G18790.1 11089975
AT1G04400.1 HORVU6Hr1G068980.2 AT4G34530.1 22739826
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G257600.2 Wheat cytosol 92.99 93.85
TraesCS6A01G223700.1 Wheat cytosol, golgi, mitochondrion, nucleus 93.29 93.72
TraesCS6D01G211700.1 Wheat cytosol, golgi, mitochondrion, nucleus 92.99 93.42
Os02t0625000-01 Rice cytosol 77.74 78.34
EER88355 Sorghum mitochondrion 74.24 74.46
Zm00001d045944_P007 Maize cytosol 73.32 73.55
CDX89827 Canola cytosol, mitochondrion 41.31 62.44
GSMUA_Achr5P18570_001 Banana cytosol 61.74 60.54
KRH13218 Soybean extracellular 7.62 59.52
GSMUA_AchrUn_... Banana cytosol, nucleus, peroxisome 58.99 58.99
KRG92422 Soybean cytosol 56.1 58.04
CDY18229 Canola cytosol, mitochondrion 50.76 57.81
VIT_05s0049g00960.t01 Wine grape cytosol 56.86 57.74
Bra015313.1-P Field mustard cytosol 50.61 57.54
KRH69122 Soybean cytosol 52.59 57.5
KRH34384 Soybean cytosol 55.64 56.85
Solyc09g090100.2.1 Tomato cytosol 54.57 56.38
AT1G04400.1 Thale cress cytosol 52.44 56.21
PGSC0003DMT400044219 Potato cytosol 55.03 55.8
CDX86636 Canola cytosol 51.68 54.77
Bra030568.1-P Field mustard cytosol 51.52 54.6
CDY15503 Canola cytosol 51.37 54.27
HORVU6Hr1G049950.12 Barley cytosol, mitochondrion 47.1 43.28
HORVU2Hr1G079220.2 Barley cytosol 46.34 42.7
HORVU6Hr1G037460.6 Barley plastid 22.26 25.26
HORVU7Hr1G109800.2 Barley plastid 20.27 22.43
HORVU7Hr1G080580.2 Barley plastid 10.21 13.9
Protein Annotations
Gene3D:1.10.579.10Gene3D:1.25.40.80MapMan:26.1.2.1.1Gene3D:3.40.50.620EMBL:AK353828EMBL:AK363503
InterPro:Crypto/Photolyase_FAD-like_sfInterPro:Crypto/Photolyase_N_sfInterPro:Cryptochr/Photolyase_FAD-bdInterPro:Cryptochrome/DNA_photolyase_1InterPro:Cryptochrome_plnInterPro:DNA_photolyase_1_CS_C
InterPro:DNA_photolyase_NUniProt:F2CQC6GO:GO:0000003GO:GO:0000166GO:GO:0003674GO:GO:0004871
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005654GO:GO:0005737GO:GO:0005773GO:GO:0006139GO:GO:0006325
GO:GO:0006338GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0007623
GO:GO:0008150GO:GO:0008152GO:GO:0009414GO:GO:0009416GO:GO:0009605GO:GO:0009606
GO:GO:0009607GO:GO:0009628GO:GO:0009637GO:GO:0009638GO:GO:0009646GO:GO:0009653
GO:GO:0009719GO:GO:0009785GO:GO:0009791GO:GO:0009882GO:GO:0009908GO:GO:0009909
GO:GO:0009911GO:GO:0009987GO:GO:0010075GO:GO:0010118GO:GO:0010244GO:GO:0010617
GO:GO:0016043GO:GO:0016604GO:GO:0019725GO:GO:0038023GO:GO:0040007GO:GO:0042752
GO:GO:0042802GO:GO:0048574GO:GO:0051607GO:GO:0071949GO:GO:0072387GO:GO:1901371
GO:GO:1902347GO:GO:2000028GO:GO:2000379EnsemblPlantsGene:HORVU6Hr1G058740EnsemblPlants:HORVU6Hr1G058740.2InterPro:IPR006050
InterPro:IPR014729PFAM:PF00875PFAM:PF03441PRINTS:PR00147ScanProsite:PS00394PFscan:PS51645
PANTHER:PTHR11455PANTHER:PTHR11455:SF44InterPro:Rossmann-like_a/b/a_foldSUPFAM:SSF48173SUPFAM:SSF52425TIGRFAMs:TIGR02766
UniParc:UPI00020045D8SEG:seg::::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CQC6]
Coordinates
chrchr6H:-:384632184..384638780
Molecular Weight (calculated)
73994.8 Da
IEP (calculated)
5.118
GRAVY (calculated)
-0.339
Length
656 amino acids
Sequence
(BLAST)
001: MPGSERTVVW FRKDLRIDDN PALAAAARDG AVLPVFIWCP AEEGRFYPGR CSRWWLKESL AHLAKSLEAL GCPLVLIRAQ TTLDALLQCV HSIRATRVVY
101: NHLYDPISLV RDDKIKNELL GLGISMQSFN GDLLYEPWEI YDENGLAFTT FNMYWEKCME LPIEISPSLA PWRLVPVSGI ENLCTSSIDN LGLESSKDEE
201: SSNALLSRAW SPGWRNAEKT LEDFVCHGLL DYSKDGMKVA GTTTSLLSPY LHYGEVSVRK IYQLVRMQQI KCGNEGNSEA GESVNLFLRS IGLREYSRYL
301: CFNFPFTHER SLLGNLKHYP WRADEDRFKS WRQGMTGYPL VDAGMRELWA TGWTHNRIRV IVSSFAVKFL LIPWTWGMKY FWDVLLDADI ESDILGWQYI
401: SGCLPDGHEL GRLDNPEVQG QKYDPDGEYV RTWIPELARM PGEWIHHPWD APSSILEVAG VELGFNYPMP IVELHMAREC LDDAISTMWQ LDTAEKLAEL
501: DGEVVEDNLS HIKSFDLPKV VLKELSPSAP HCDQKVPTDD GRNLELQPKE LTGLNKQTIC VDVIKASKME DTGSIVNSPI SRKRSSSGSV FDVPSCSSSV
601: EVRSQNQRPG GYFVGSSKYI LQKAERNCFD KAEDDDSAHS GTNTSRASKR PAASQG
Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)
001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK
Arabidopsis Description
CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.