Factsheet for GSMUA_AchrUn_randomP16690_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P13690_001
GSMUA_Achr1P13700_001
GSMUA_Achr3P08340_001
GSMUA_Achr3P20130_001
GSMUA_Achr3P31750_001
GSMUA_Achr5P18570_001
GSMUA_Achr6P09050_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04400.1	GSMUA_Achr5P18570_001	AT1G04400.1	15805487
AT1G04400.1	GSMUA_AchrUn_...	AT1G04400.1	15805487
AT1G04400.1	GSMUA_Achr1P13690_001	AT1G53090.1	22739826
AT1G04400.1	GSMUA_Achr1P13700_001	AT1G53090.1	22739826
AT1G04400.1	GSMUA_Achr3P31750_001	AT1G53090.1	22739826
AT1G04400.1	GSMUA_Achr3P08340_001	AT2G18790.1	11089975
AT1G04400.1	GSMUA_Achr3P20130_001	AT2G32950.1	11509693
AT1G04400.1	GSMUA_AchrUn_...	AT2G32950.1	11509693
AT1G04400.1	GSMUA_Achr3P20130_001	AT2G32950.1	22739826
AT1G04400.1	GSMUA_AchrUn_...	AT2G32950.1	22739826
AT1G04400.1	GSMUA_Achr10P...	AT4G34530.1	22739826
AT1G04400.1	GSMUA_Achr6P09050_001	AT4G34530.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P18570_001	Banana	cytosol	76.37	74.89
CDX89827	Canola	cytosol, mitochondrion	43.14	65.21
VIT_05s0049g00960.t01	Wine grape	cytosol	60.82	61.76
KRH69122	Soybean	cytosol	55.49	60.67
CDY18229	Canola	cytosol, mitochondrion	52.9	60.24
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	59.76	60.03
Bra015313.1-P	Field mustard	cytosol	52.74	59.97
KRG92422	Soybean	cytosol	57.93	59.94
Os02t0625000-01	Rice	cytosol	59.3	59.75
Solyc09g090100.2.1	Tomato	cytosol	57.77	59.69
TraesCS6B01G257600.2	Wheat	cytosol	58.99	59.54
KRH13218	Soybean	extracellular	7.62	59.52
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	58.84	59.11
HORVU6Hr1G058740.2	Barley	cytosol	58.99	58.99
PGSC0003DMT400044219	Potato	cytosol	57.93	58.73
KRH34384	Soybean	cytosol	56.86	58.1
AT1G04400.1	Thale cress	cytosol	54.12	58.01
Zm00001d045944_P007	Maize	cytosol	56.86	57.03
CDX86636	Canola	cytosol	53.2	56.38
EER88355	Sorghum	mitochondrion	56.1	56.27
Bra030568.1-P	Field mustard	cytosol	53.05	56.22
CDY15503	Canola	cytosol	52.74	55.72
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	49.24	46.28
GSMUA_Achr8P26060_001	Banana	cytosol	22.1	27.83
GSMUA_Achr1P10510_001	Banana	plastid	19.21	22.54
GSMUA_AchrUn_...	Banana	plastid	7.77	15.69
GSMUA_AchrUn_...	Banana	cytosol	3.35	15.49
GSMUA_Achr5P21430_001	Banana	cytosol	10.37	14.91

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674
GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785
GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	EnsemblPlantsGene:GSMUA_AchrUn_randomG16690_001	EnsemblPlants:GSMUA_AchrUn_randomP16690_001	EnsemblPlants:GSMUA_AchrUn_randomT16690_001
InterPro:IPR006050	InterPro:IPR014729	UniProt:M0U9S8	PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147
ScanProsite:PS00394	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173
SUPFAM:SSF52425	TIGRFAMs:TIGR02766	UniParc:UPI0002955427	SEG:seg	:	:

Description

Cryptochrome-2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG16690_001]

Coordinates

chrchrUn_random:+:78422168..78430852

Molecular Weight (calculated)

75215.6 Da

IEP (calculated)

8.501

GRAVY (calculated)

-0.289

Length

656 amino acids

Sequence
(BLAST)

001: MGSQTKTIVW FRRDLRIEDN RALATAAKDG RVLPVFVWCP SEEGQFFPGR VSRWWLKQSL EHLDQSLRSL GAPFVFIRAE STLAALLQCI GTVGATRLVY
101: NHLYDPVSLV RDHKIKSQLE TLGISVQSFN GDLLYEPWEI YDESGLAFTT FDAYWSKCMS LPIEPTLLLP PWKLVPLEGT GSVVSCPIEE LGLENEIEKS
201: SNALLSRCWS PGWSNADKVL SEFISGHLLD YSENRMKVEG TTTSLLSPYL HYGELSIRKI YQNVRIKQIQ WAKEGNCRAE ESVNFFLRSI GLREYSRYLC
301: FNFPFTYERS LLGNLKHYPW RADEGQFKSW RQGRTGYPLV DAGMRELWAT GWIHNRSRVI VASFFVKFLL LPWTWGLKYF WDTLLDADLE SDILGWQYVS
401: GSLPDGHELK RLDSPEVQGQ KYDPDGEYVR NWIPELARVP TEWIHHPWDA PRTLLKASGV ELGLNYPQPI IEFDTARDQL DDAVNMMWQL DRASRVAKLS
501: GLEEVVADNL ISLNTLDIPK VIVKEEVFCS SSSLDQKVPS LHNMKDSSIK KKPKDVSGKR SDLVGSCSPM NILEKSKIDD VQILVKNTIQ WTKIIQTRLI
601: LIILVKKHIK LEKKRKKRIL MLKAALRDRD HARKLHSSNG VEVLNAQGWK CSLGRL

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.