Factsheet for GSMUA_Achr1P10510_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0661800-01	Rice	plastid	69.41	66.9
EER90163	Sorghum	plastid	68.69	66.55
HORVU7Hr1G109800.2	Barley	plastid	67.98	64.08
TraesCS7A01G489800.1	Wheat	plastid	67.8	63.91
Zm00001d046935_P001	Maize	plastid	61.36	63.52
TraesCS7D01G476200.1	Wheat	plastid	67.62	63.32
TraesCS7B01G392900.2	Wheat	plastid	67.44	63.04
VIT_04s0008g02670.t01	Wine grape	plastid	65.3	62.29
PGSC0003DMT400076096	Potato	cytosol, plastid	60.47	62.02
KRH61917	Soybean	plastid	64.22	61.47
AT5G24850.1	Thale cress	plastid	61.0	59.93
Bra036524.1-P	Field mustard	plastid	58.86	59.6
Bra009798.1-P	Field mustard	cytosol	57.6	58.97
Solyc08g074270.2.1	Tomato	nucleus	60.82	58.93
CDX88137	Canola	plastid	58.68	57.75
CDX87114	Canola	golgi	52.59	56.11
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	55.81	54.26
CDY19825	Canola	plastid	58.86	54.2
CDX80473	Canola	plastid	59.57	40.81
GSMUA_AchrUn_...	Banana	plastid	17.53	30.15
GSMUA_Achr5P21430_001	Banana	cytosol	23.08	28.29
GSMUA_AchrUn_...	Banana	cytosol	6.8	26.76
GSMUA_Achr8P26060_001	Banana	cytosol	22.54	24.18
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	22.54	19.21
GSMUA_Achr5P18570_001	Banana	cytosol	21.65	18.09
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	21.65	17.34

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0003913	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G10510_001	EnsemblPlants:GSMUA_Achr1P10510_001	EnsemblPlants:GSMUA_Achr1T10510_001	InterPro:IPR006050
InterPro:IPR014729	UniProt:M0RYR0	PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02765
UniParc:UPI00029578E6	SEG:seg	:	:	:	:

Description

Cryptochrome DASH, chloroplastic/mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G10510_001]

Coordinates

chr1:-:7928454..7939753

Molecular Weight (calculated)

63770.4 Da

IEP (calculated)

8.853

GRAVY (calculated)

-0.350

Length

559 amino acids

Sequence
(BLAST)

001: MTSIIRASSS SPSFFPSKLP SFHSKPVPNP PLFGLRLLMS IVADPSPRGT DDRRLAARCH AVPGLSADEV VAASDEAFGR HSSPSLKRSG SGVAIMWFRN
101: DLRLMDNEAL VRAWAASESV LPVYCVDPRN FGATHYFGFP KTGALRAQFL IECLEDLKKN LMKRGLNLLV RFGKPEDILP SIARVFSAHT VYAQKETCSE
201: ELLVEKLVLK VLVWGSTMYH IDDIPFSTKN LPDVYTQFRK AVESKCSIRG CFKLPVSLGP PPNTETLIIA IESPCLFFIL KMQHEQGIHF LGGENAALGR
301: ISEYFWKKAR NLLIDLLRVY KETRNGMMGP DYSTKFSPWL ASGSLSPRYI YEEVRRYEKQ RVANDSTYWV LFELIWRDYF KFISMKHGNS IFHLGGPRNV
401: VSKWSQDRSL FESWRDGRTG YPLIDANMKE LSTTGFMSNR GRQIVCSFLV RDMGIDWRMG AEWFETCLLD YDPASNYGNW TYGAGVGNDP REDRYFSIPK
501: QAKTYDPEGE YVAYWLPELR QLPKERRNFP GQTHIIVMSE KGEDRTKCNE DKSWHISQG

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.