Factsheet for PGSC0003DMT400076096

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g074270.2.1	Tomato	nucleus	96.51	91.16
VIT_04s0008g02670.t01	Wine grape	plastid	72.11	67.06
AT5G24850.1	Thale cress	plastid	66.97	64.15
KRH61917	Soybean	plastid	68.07	63.53
Bra036524.1-P	Field mustard	plastid	64.04	63.22
Bra009798.1-P	Field mustard	cytosol	63.3	63.19
EER90163	Sorghum	plastid	66.42	62.74
Os06t0661800-01	Rice	plastid	66.61	62.59
CDX88137	Canola	plastid	64.04	61.44
GSMUA_Achr1P10510_001	Banana	plastid	62.02	60.47
HORVU7Hr1G109800.2	Barley	plastid	65.69	60.37
TraesCS7A01G489800.1	Wheat	plastid	65.14	59.87
Zm00001d046935_P001	Maize	plastid	58.9	59.44
TraesCS7B01G392900.2	Wheat	plastid	64.59	58.86
TraesCS7D01G476200.1	Wheat	plastid	64.22	58.63
CDX87114	Canola	golgi	56.33	58.59
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	61.1	57.91
CDY19825	Canola	plastid	62.75	56.34
CDX80473	Canola	plastid	65.14	43.5
PGSC0003DMT400081378	Potato	cytosol	22.75	27.37
PGSC0003DMT400073684	Potato	mitochondrion	22.57	22.82
PGSC0003DMT400044219	Potato	cytosol	24.59	20.71
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	20.92	19.55

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0003913	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR006050	InterPro:IPR014729	UniProt:M1CW65	PFAM:PF00875
PFAM:PF03441	EnsemblPlantsGene:PGSC0003DMG400029591	PGSC:PGSC0003DMG400029591	EnsemblPlants:PGSC0003DMT400076096	PRINTS:PR00147	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02765
UniParc:UPI0002955A71	:	:	:	:	:

Description

Cryptochrome DASH, chloroplastic/mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400029591]

Coordinates

chr8:-:45118884..45123873

Molecular Weight (calculated)

62512.7 Da

IEP (calculated)

9.202

GRAVY (calculated)

-0.537

Length

545 amino acids

Sequence
(BLAST)

001: MASLTARTTP TVQNVPGLTT EEMERVCEQT FQRYESGGLG KRKGKGVAIV WFRNDLRVLD NEALLRAWVS SEAILPVYCV DPRLFGTTHY FGLPKTGALR
101: AQFIIECLND LKRNLVKRGL DLLIQHGKPE EIIPSLVKAY KAHTVYAHKE TCSEEVKVEK LVTRNLQKLV LPSSGGLGKE PRSINTTKLE LVWGSTMYHI
201: DDLPFDCESL PDVYTQFRKS VEYKSKIRNC TRLPTSFGPP PEVGDWGHVP QVTELGLQQE KVSKGMNFVG GESAALGRVH DYFWKKDLLK VYKETRNGML
301: GPDYSTKFSP WLASGSLSPR FIYEEVKRYE KERLSNDSTY WVLFELIWRD YFRFLSIKLG NLLFQAGGPQ QVNINWSQDQ TMFDAWRRGQ TGYPLIDANM
401: KELAATGFMS NRGRQIVCSF LVRDMGIDWR MGAEWFETCL LDYDPCSNYG NWTYGAGVGN DPREDRYFSI PKQAQNYDPE GEFVAYWLPE LRALPREKRH
501: SPGMMYLNPI VALKHGYTKK TGDSKTAFSS RRGRPEDNRR KRHGY

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.