Factsheet for Bra009798.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88137	Canola	plastid	94.69	91.02
Bra036524.1-P	Field mustard	plastid	86.45	85.51
AT5G24850.1	Thale cress	plastid	84.43	81.02
PGSC0003DMT400076096	Potato	cytosol, plastid	63.19	63.3
KRH61917	Soybean	plastid	65.38	61.13
VIT_04s0008g02670.t01	Wine grape	plastid	64.47	60.07
Solyc08g074270.2.1	Tomato	nucleus	62.82	59.45
GSMUA_Achr1P10510_001	Banana	plastid	58.97	57.6
Os06t0661800-01	Rice	plastid	60.81	57.24
EER90163	Sorghum	plastid	60.07	56.85
HORVU7Hr1G109800.2	Barley	plastid	60.62	55.82
TraesCS7A01G489800.1	Wheat	plastid	60.07	55.31
Zm00001d046935_P001	Maize	plastid	54.03	54.63
TraesCS7B01G392900.2	Wheat	plastid	59.52	54.35
TraesCS7D01G476200.1	Wheat	plastid	59.34	54.27
Bra004444.1-P	Field mustard	cytosol	23.81	28.57
Bra021122.1-P	Field mustard	cytosol	12.64	21.04
Bra015313.1-P	Field mustard	cytosol	21.61	20.45
Bra030568.1-P	Field mustard	cytosol	22.53	19.87
Bra037880.1-P	Field mustard	cytosol	22.89	18.38

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	EnsemblPlantsGene:Bra009798	EnsemblPlants:Bra009798.1
EnsemblPlants:Bra009798.1-P	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1
InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0003913	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR006050
InterPro:IPR014729	UniProt:M4D001	PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02765
UniParc:UPI000253F26B	SEG:seg	:	:	:	:

Description

AT5G24850 (E=6e-267) CRY3 | CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding

Coordinates

chrA06:-:17334828..17337417

Molecular Weight (calculated)

62196.0 Da

IEP (calculated)

9.281

GRAVY (calculated)

-0.561

Length

546 amino acids

Sequence
(BLAST)

001: MNGHIHRVPA LDEEEMESVA GKTFERYALP SSAKRNGKGV AILWFRNDLR VLDNDALYRA WSSSDTLLPV YCLDPRLFHT THYFSFPKTG ALRGAFLMEC
101: LADLRKNLMR RGLNLLIRSG KPEDILPSLA KDFGAHSVFG HKETCSEELH VERLVGQALK GAGNGTKLEL IWGSTMYHKD DLPFDVLDLP EMYTQFRKSV
201: EAKCRIRSST RIPISLGPTP SVDNWGDVPT LGQLGIEPQE VTRGMRFLGG ESAGDLLKVY KETRNGMLGA DYSTKFSPWL AFGCISPRFI YEEVRSFNPL
301: SNVPKAHRSF HLCGKYLQVQ RYERERVANN STYWVLFELI WRDYFRFLSR KCGNSLFHLG GPRNVQGEWS QDKKLFEAWR DGKTGYPIID ANMKELSTTG
401: FMSNRGRQIV CSFLVRDMGL DWRMGAEWFE TCLLDYDPCS NYGNWTYGAG VGNDPREDRY FSIPKQAQNY DPEGEYVAFW VQQLRRLPKE KRHWPGRLMY
501: MDTVVPLKHG HHGGGGNAQT SRGSKSSGGG FRGNHSGRRS RHNGPP

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.