Factsheet for Bra015313.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001650.1-P
Bra005541.1-P
Bra011540.1-P
Bra015313.1-P
Bra022192.1-P
Bra030568.1-P
Bra034636.1-P
Bra038098.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04400.1	Bra015313.1-P	AT1G04400.1	15805487
AT1G04400.1	Bra030568.1-P	AT1G04400.1	15805487
AT1G04400.1	Bra038098.1-P	AT1G53090.1	22739826
AT1G04400.1	Bra001650.1-P	AT2G18790.1	11089975
AT1G04400.1	Bra022192.1-P	AT2G18790.1	11089975
AT1G04400.1	Bra005541.1-P	AT2G32950.1	11509693
AT1G04400.1	Bra005541.1-P	AT2G32950.1	22739826
AT1G04400.1	Bra011540.1-P	AT4G34530.1	22739826
AT1G04400.1	Bra034636.1-P	AT4G34530.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89827	Canola	cytosol, mitochondrion	71.92	95.62
Bra030568.1-P	Field mustard	cytosol	89.6	83.52
AT1G04400.1	Thale cress	cytosol	87.87	82.84
KRH69122	Soybean	cytosol	65.34	62.83
KRG92422	Soybean	cytosol	68.28	62.15
KRH34384	Soybean	cytosol	67.42	60.59
Solyc09g090100.2.1	Tomato	cytosol	66.2	60.16
PGSC0003DMT400044219	Potato	cytosol	66.72	59.51
VIT_05s0049g00960.t01	Wine grape	cytosol	66.03	58.98
KRH13218	Soybean	extracellular	8.49	58.33
GSMUA_Achr5P18570_001	Banana	cytosol	62.56	53.96
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	59.97	52.74
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	57.71	51.0
Os02t0625000-01	Rice	cytosol	57.37	50.84
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	57.54	50.84
HORVU6Hr1G058740.2	Barley	cytosol	57.54	50.61
TraesCS6B01G257600.2	Wheat	cytosol	56.67	50.31
EER88355	Sorghum	mitochondrion	55.81	49.24
Zm00001d045944_P007	Maize	cytosol	55.63	49.08
Bra037880.1-P	Field mustard	cytosol	54.07	45.88
Bra021122.1-P	Field mustard	cytosol	14.56	25.61
Bra036524.1-P	Field mustard	plastid	21.14	22.1
Bra009798.1-P	Field mustard	cytosol	20.45	21.61
Bra004444.1-P	Field mustard	cytosol	12.48	15.82

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	EnsemblPlantsGene:Bra015313	EnsemblPlants:Bra015313.1
EnsemblPlants:Bra015313.1-P	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_pln
InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023
InterPro:IPR006050	InterPro:IPR014729	EMBL:KM112033	UniProt:M4DFP0	PFAM:PF00875	PFAM:PF03441
PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766	UniParc:UPI000254408F	SEG:seg

Description

AT1G04400 (E=6e-300) CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization

Coordinates

chrA10:+:2525609..2528256

Molecular Weight (calculated)

65703.0 Da

IEP (calculated)

6.026

GRAVY (calculated)

-0.398

Length

577 amino acids

Sequence
(BLAST)

001: MATNRKTIVW FRRDLRIEDN PALAAAAREG SVFPVFIWCP EEEGQFHPGR ASRWWMKQSL AHLNQSLKSL GSHLTFIKTH STVSAILDCV RATGATKVVF
101: NHLYDPVSLV RDHNVKEKLM ERGISMQGYN GDLLYEPWEI NSENGKPFTS FSPYWKKCLD MSVESVMLPP PWRLIPLTAA EGVWACSIEE LGLEDEAEKP
201: SNALLTSAWS PGWSSADKTL TEFIEKHLID YAKNSKKVVG NSTSMLSPYL HFGEISVRRV FQCVRMKKII WARDKNTEGE ESADLFLRGI GQREYSRYIC
301: FNFPFTHEQS LLSHLRFFPW DADVGKFKAW SQGRTGYPLV DAGMRELWAT GWMHNRIRVI VSSFAVKFLL LPWKWGMKYF WDTLLDADLE CDIIGWQYIS
401: GSLPDGHELD RLDNPAIQGA KYDPEGEYIR QWLPELARMP TEWIHHPWDA PSTVLKASGV ELGANYAKPI VDIDTARELL TKAISRTREA QIMIGAAPDE
501: IVADSYEALE GNHTVKVPGL LCPSASSNDQ RVPSAVRYNG LKRVKPAEEE EEEEREMKRC REERDLFSTA ESSSSDG

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.