Factsheet for GSMUA_Achr5P18570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P13690_001
GSMUA_Achr1P13700_001
GSMUA_Achr3P08340_001
GSMUA_Achr3P20130_001
GSMUA_Achr3P31750_001
GSMUA_Achr5P18570_001
GSMUA_Achr6P09050_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04400.1	GSMUA_Achr5P18570_001	AT1G04400.1	15805487
AT1G04400.1	GSMUA_AchrUn_...	AT1G04400.1	15805487
AT1G04400.1	GSMUA_Achr1P13690_001	AT1G53090.1	22739826
AT1G04400.1	GSMUA_Achr1P13700_001	AT1G53090.1	22739826
AT1G04400.1	GSMUA_Achr3P31750_001	AT1G53090.1	22739826
AT1G04400.1	GSMUA_Achr3P08340_001	AT2G18790.1	11089975
AT1G04400.1	GSMUA_Achr3P20130_001	AT2G32950.1	11509693
AT1G04400.1	GSMUA_AchrUn_...	AT2G32950.1	11509693
AT1G04400.1	GSMUA_Achr3P20130_001	AT2G32950.1	22739826
AT1G04400.1	GSMUA_AchrUn_...	AT2G32950.1	22739826
AT1G04400.1	GSMUA_Achr10P...	AT4G34530.1	22739826
AT1G04400.1	GSMUA_Achr6P09050_001	AT4G34530.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	74.89	76.37
CDX89827	Canola	cytosol, mitochondrion	43.2	66.59
VIT_05s0049g00960.t01	Wine grape	cytosol	62.63	64.86
KRG92422	Soybean	cytosol	59.79	63.09
CDY18229	Canola	cytosol, mitochondrion	54.26	63.02
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	61.29	62.79
Bra015313.1-P	Field mustard	cytosol	53.96	62.56
KRH69122	Soybean	cytosol	56.05	62.5
TraesCS6B01G257600.2	Wheat	cytosol	60.69	62.46
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	60.69	62.17
KRH13218	Soybean	extracellular	7.77	61.9
HORVU6Hr1G058740.2	Barley	cytosol	60.54	61.74
KRH34384	Soybean	cytosol	59.19	61.68
Os02t0625000-01	Rice	cytosol	59.94	61.6
Solyc09g090100.2.1	Tomato	cytosol	58.15	61.26
AT1G04400.1	Thale cress	cytosol	55.61	60.78
PGSC0003DMT400044219	Potato	cytosol	58.59	60.59
EER88355	Sorghum	mitochondrion	59.04	60.4
Zm00001d045944_P007	Maize	cytosol	58.89	60.24
CDX86636	Canola	cytosol	55.16	59.61
Bra030568.1-P	Field mustard	cytosol	55.16	59.61
CDY15503	Canola	cytosol	54.71	58.94
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	50.07	47.99
GSMUA_Achr8P26060_001	Banana	cytosol	22.72	29.17
GSMUA_Achr1P10510_001	Banana	plastid	18.09	21.65
GSMUA_AchrUn_...	Banana	cytosol	3.44	16.2
GSMUA_AchrUn_...	Banana	plastid	7.77	16.0
GSMUA_Achr5P21430_001	Banana	cytosol	10.16	14.91

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674
GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785
GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	EnsemblPlantsGene:GSMUA_Achr5G18570_001	EnsemblPlants:GSMUA_Achr5P18570_001	EnsemblPlants:GSMUA_Achr5T18570_001
InterPro:IPR006050	InterPro:IPR014729	UniProt:M0SZN6	PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147
ScanProsite:PS00394	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173
SUPFAM:SSF52425	TIGRFAMs:TIGR02766	UniParc:UPI00029599CE	SEG:seg	:	:

Description

Cryptochrome-2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18570_001]

Coordinates

chr5:-:20060720..20066914

Molecular Weight (calculated)

75721.7 Da

IEP (calculated)

6.111

GRAVY (calculated)

-0.388

Length

669 amino acids

Sequence
(BLAST)

001: MGSQAKTVVW FRRDLRIEDN PALSAAAKDG CVLPVFIWCP SEEGQFYPGR VSRWWLKHSL AHLDRSLRSL GAPLTFIRSE STLAALLQCI GAIRATRLVY
101: NHLYDPVSLV RDHKIKSQLV SLGISVQSFN GDLLYEPWGV YDESGLAFTT FDAYWGKCRS MPNELTMLLP PWKLVPPTGT ESVESCSIEE FGLENEIEKS
201: SNALLSRAWS PGWSNADKVL SEFIDEHLLE YSNNRMKVEG TTTSLLSPYL HFGELSVRKI YQNVRMKQIQ WAKDGNCKAE ESVNFFLQSI GLREYSRYLC
301: FNFPFTYERS LLGNLKHYPW RADEGQFKSW RQGKTGYPLV DAGMRELWAT GWIHNRTRVI VASFFVKILL LPWTWGMKYF WDTLLDADLE SDILGWQYVS
401: GSLPDGHELK RLDNPEVLGQ KYDPDGEYIR NWIPELARLP TEWIHHPWDA PSTVLKAAGV ELGLNYPRPI VEILTARERL DDAVDMMWEL DRAAKVAKLS
501: SSDEVVADNL INLNSLDIPK VVVKKEVYCT SSSLDQRVPS IHNMKDNSVN KKPRDPSGEK PCAVILSSHS NTVEKSKMDV DLLSTAESSS ARKRSISESH
601: CAVPTHFSSS PDINPVQEDG STGQCHLNRS SSDYPWQGAD GIGEGKEEED FDAQSSFKGF RPCKKPACL

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.