Factsheet for GSMUA_Achr8P26060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04723	Sorghum	cytosol, plastid	73.7	69.82
TraesCS6D01G167100.1	Wheat	plastid	72.55	69.36
VIT_09s0002g05990.t01	Wine grape	mitochondrion	71.59	69.33
Os02t0204400-00	Rice	plastid	73.13	69.15
TraesCS6A01G177000.2	Wheat	mitochondrion, plastid	71.59	67.21
Zm00001d015724_P001	Maize	plastid	46.26	66.21
KRH44412	Soybean	mitochondrion, plastid	71.21	65.9
PGSC0003DMT400073684	Potato	mitochondrion	67.56	65.31
Bra021122.1-P	Field mustard	cytosol	41.07	65.24
Solyc12g042910.1.1	Tomato	mitochondrion	67.37	65.12
HORVU6Hr1G037460.6	Barley	plastid	71.78	64.71
AT3G15620.1	Thale cress	mitochondrion	68.91	64.57
CDY20139	Canola	cytosol, nucleus, plastid	68.71	63.81
CDY21853	Canola	mitochondrion, plastid	67.95	62.77
GSMUA_Achr5P18570_001	Banana	cytosol	29.17	22.72
GSMUA_Achr1P10510_001	Banana	plastid	24.18	22.54
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	27.83	22.1
GSMUA_AchrUn_...	Banana	cytosol	5.95	21.83
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	27.06	20.2
GSMUA_Achr5P21430_001	Banana	cytosol	15.55	17.76
GSMUA_AchrUn_...	Banana	plastid	9.98	16.0

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:14.9.1	Gene3D:3.40.50.620	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0003914	GO:GO:0008150
GO:GO:0009411	GO:GO:0009628	EnsemblPlantsGene:GSMUA_Achr8G26060_001	EnsemblPlants:GSMUA_Achr8P26060_001	EnsemblPlants:GSMUA_Achr8T26060_001	InterPro:IPR006050
InterPro:IPR014729	UniProt:M0TTQ9	PFAM:PF00875	PFAM:PF03441	PFscan:PS51645	PANTHER:PTHR11455
PANTHER:PTHR11455:SF9	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	UniParc:UPI000295399E	SEG:seg

Description

(6-4)DNA photolyase [Source:GMGC_GENE;Acc:GSMUA_Achr8G26060_001]

Coordinates

chr8:-:29737256..29744267

Molecular Weight (calculated)

59761.6 Da

IEP (calculated)

8.769

GRAVY (calculated)

-0.390

Length

521 amino acids

Sequence
(BLAST)

001: MESNAVVWFR KGLRIHDNPA LDYACRGSSH IFPVFVLDPR YLHPDPSAFS LGSARAGLNR IRFLLDCLLD LDSSLRNLGS RLLVLKGHPE PASVICQILK
101: DWNIRKLCYE FDTEPYGQAR DRQVTDFASQ LGIEVFSPVS HTLFDPAEVI KKNGGRPPLT YQSFVALAGK PPDPLAKTYS ELPPVGNVGN VELLNIPTIE
201: ELGYKDIEQE EFSPFGGGES EALRRLKEVL KDKEWVANFE KPKGDPSAFW KPATTVLSPY LKFGCLSSRY FYHCLHSVYL TVGKHTSPPV SLVGQLLWRE
301: FFYTVAFGTP NFDQMRGNKI CKQIPWKDDD KLLVAWREGR TGYPWIDAIM IQLKKWGWMH HLARHSVACF LTRGDLFIHW EKGRDVFERL LIDSDWAINN
401: GNWLWLSCSA FFYQYHRIYS PISFGRKYDP DGKYIRHFLP VLKDMPNEYI YEPWTAPLSI QKKANCIIGK DYPRPVVVHD KANKECRKKM GEAYGKVGSV
501: EEEDNVAASE STAKQKRKRR T

Best Arabidopsis Sequence Match ( AT3G15620.1 )
(BLAST)

001: MQRFCVCSPS SYRLNPITSM ATGSGSLIWF RKGLRVHDNP ALEYASKGSE FMYPVFVIDP HYMESDPSAF SPGSSRAGVN RIRFLLESLK DLDSSLKKLG
101: SRLLVFKGEP GEVLVRCLQE WKVKRLCFEY DTDPYYQALD VKVKDYASST GVEVFSPVSH TLFNPAHIIE KNGGKPPLSY QSFLKVAGEP SCAKSELVMS
201: YSSLPPIGDI GNLGISEVPS LEELGYKDDE QADWTPFRGG ESEALKRLTK SISDKAWVAN FEKPKGDPSA FLKPATTVMS PYLKFGCLSS RYFYQCLQNI
301: YKDVKKHTSP PVSLLGQLLW REFFYTTAFG TPNFDKMKGN RICKQIPWNE DHAMLAAWRD GKTGYPWIDA IMVQLLKWGW MHHLARHCVA CFLTRGDLFI
401: HWEQGRDVFE RLLIDSDWAI NNGNWMWLSC SSFFYQFNRI YSPISFGKKY DPDGKYIRHF LPVLKDMPKQ YIYEPWTAPL SVQTKANCIV GKDYPKPMVL
501: HDSASKECKR KMGEAYALNK KMDGKVDEEN LRDLRRKLQK DEHEESKIRN QRPKLK

Arabidopsis Description

UVR3(6-4)DNA photolyase [Source:UniProtKB/Swiss-Prot;Acc:O48652]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.