Factsheet for TraesCS6A01G177000.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G167100.1	Wheat	plastid	94.23	95.96
HORVU6Hr1G037460.6	Barley	plastid	92.07	88.41
Os02t0204400-00	Rice	plastid	84.86	85.48
EES04723	Sorghum	cytosol, plastid	82.7	83.45
Zm00001d015724_P001	Maize	plastid	52.79	80.49
GSMUA_Achr8P26060_001	Banana	cytosol	67.21	71.59
VIT_09s0002g05990.t01	Wine grape	mitochondrion	64.14	66.17
Bra021122.1-P	Field mustard	cytosol	39.1	66.16
PGSC0003DMT400073684	Potato	mitochondrion	62.88	64.75
Solyc12g042910.1.1	Tomato	mitochondrion	62.52	64.38
AT3G15620.1	Thale cress	mitochondrion	63.78	63.67
CDY20139	Canola	cytosol, nucleus, plastid	63.6	62.92
CDY21853	Canola	mitochondrion, plastid	63.42	62.41
KRH44412	Soybean	mitochondrion, plastid	62.88	61.99
TraesCS7A01G489800.1	Wheat	plastid	24.5	22.93
TraesCS6A01G203300.1	Wheat	cytosol	26.13	20.77
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	24.32	20.67
TraesCS2A01G340000.1	Wheat	cytosol	25.77	20.08
TraesCS7A01G344600.1	Wheat	plastid	14.59	18.12

Protein Annotations

EnsemblPlants:TraesCS6A01G177000.2	EnsemblPlantsGene:TraesCS6A01G177000	Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:DNA_photolyase_N	InterPro:IPR006050	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold
PANTHER:PTHR11455	PANTHER:PTHR11455:SF9	PFAM:PF00875	PFAM:PF03441	PFscan:PS51645	SEG:seg
SUPFAM:SSF48173	SUPFAM:SSF52425	MapMan:14.9.1	:	:	:

Description

No Description!

Coordinates

chr6A:+:196330613..196336136

Molecular Weight (calculated)

62857.6 Da

IEP (calculated)

8.724

GRAVY (calculated)

-0.484

Length

555 amino acids

Sequence
(BLAST)

001: MDAATAATAT AAAALVWFRK GLRVHDNPAL DAARRSAARV YPVFVLDPRY LRSDPAAPSQ GSARAGVARV RFLLESLRDL DARLRRLGSR LLVLRARDDV
101: SDAVCAALKD WNIGKLCFES DTEPYALARD KRVTDFAAAS GIEVFSPVSH TLFDPAEIIE KNGGRPPLTY KSFVATAGEP PKPVMEEYSE LPPIGDTGGY
201: ELLPVPKLEE LGYGDVSQEY IPPFRGGETE ALKRMRESLQ DKEWVAKFEK PKGDPSAFLK PATTVLSPYL KFGCLSARYF YHCIQDVYRS TKTHTKPPVS
301: LAGQLLWRDF FYTVSFGTPN FDQMEGNKIC KQIPWIENEE LFVAWRDGRT GYPWIDAIMI QLRKWGWMHH LARHSVACFL TRGDLYIHWE QGRDVFERLL
401: IDSDWAINNG NWLWLSCSSF FYQYHRIYSP ISFGKKYDPN GDYIRHFIPV LKDMPKEYIY EPWTAPLSVQ EKARCIVGKD YPKPVVDHEA ASKECRRRMG
501: EAYASNRLGG NPVKGNSSNS SRRKFSDGGQ ESKMSPTHPC PSNRGREADP RAEKS

Best Arabidopsis Sequence Match ( AT3G15620.1 )
(BLAST)

001: MQRFCVCSPS SYRLNPITSM ATGSGSLIWF RKGLRVHDNP ALEYASKGSE FMYPVFVIDP HYMESDPSAF SPGSSRAGVN RIRFLLESLK DLDSSLKKLG
101: SRLLVFKGEP GEVLVRCLQE WKVKRLCFEY DTDPYYQALD VKVKDYASST GVEVFSPVSH TLFNPAHIIE KNGGKPPLSY QSFLKVAGEP SCAKSELVMS
201: YSSLPPIGDI GNLGISEVPS LEELGYKDDE QADWTPFRGG ESEALKRLTK SISDKAWVAN FEKPKGDPSA FLKPATTVMS PYLKFGCLSS RYFYQCLQNI
301: YKDVKKHTSP PVSLLGQLLW REFFYTTAFG TPNFDKMKGN RICKQIPWNE DHAMLAAWRD GKTGYPWIDA IMVQLLKWGW MHHLARHCVA CFLTRGDLFI
401: HWEQGRDVFE RLLIDSDWAI NNGNWMWLSC SSFFYQFNRI YSPISFGKKY DPDGKYIRHF LPVLKDMPKQ YIYEPWTAPL SVQTKANCIV GKDYPKPMVL
501: HDSASKECKR KMGEAYALNK KMDGKVDEEN LRDLRRKLQK DEHEESKIRN QRPKLK

Arabidopsis Description

UVR3(6-4)DNA photolyase [Source:UniProtKB/Swiss-Prot;Acc:O48652]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.