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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 2
  • plastid 2
  • mitochondrion 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:mitochondrion
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88355
EER94971
EES05656
KXG31183
OQU87453

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04400.1 EER88355 AT1G04400.1 15805487
AT1G04400.1 OQU87453 AT1G53090.1 22739826
AT1G04400.1 EER94971 AT2G18790.1 11089975
AT1G04400.1 KXG31183 AT2G32950.1 11509693
AT1G04400.1 KXG31183 AT2G32950.1 22739826
AT1G04400.1 EES05656 AT4G34530.1 22739826
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d045944_P007 Maize cytosol 91.59 91.59
TraesCS6D01G211700.1 Wheat cytosol, golgi, mitochondrion, nucleus 75.23 75.34
TraesCS6A01G223700.1 Wheat cytosol, golgi, mitochondrion, nucleus 75.23 75.34
TraesCS6B01G257600.2 Wheat cytosol 74.31 74.77
HORVU6Hr1G058740.2 Barley cytosol 74.46 74.24
Os02t0625000-01 Rice cytosol 73.24 73.58
CDX89827 Canola cytosol, mitochondrion 40.83 61.52
KRH13218 Soybean extracellular 7.65 59.52
GSMUA_Achr5P18570_001 Banana cytosol 60.4 59.04
KRG92422 Soybean cytosol 56.12 57.89
KRH69122 Soybean cytosol 52.29 57.0
VIT_05s0049g00960.t01 Wine grape cytosol 56.12 56.81
KRH34384 Soybean cytosol 55.35 56.39
CDY18229 Canola cytosol, mitochondrion 49.54 56.25
GSMUA_AchrUn_... Banana cytosol, nucleus, peroxisome 56.27 56.1
Bra015313.1-P Field mustard cytosol 49.24 55.81
Solyc09g090100.2.1 Tomato cytosol 53.36 54.96
AT1G04400.1 Thale cress cytosol 51.22 54.74
PGSC0003DMT400044219 Potato cytosol 53.98 54.56
CDX86636 Canola cytosol 50.31 53.15
Bra030568.1-P Field mustard cytosol 50.15 52.99
CDY15503 Canola cytosol 50.0 52.66
KXG30485 Sorghum cytosol 46.79 43.28
KXG26438 Sorghum cytosol 46.18 42.54
EES04723 Sorghum cytosol, plastid 22.17 26.36
EER90163 Sorghum plastid 20.03 22.7
EER94877 Sorghum cytosol, plastid 10.09 14.77
Protein Annotations
Gene3D:1.10.579.10Gene3D:1.25.40.80MapMan:26.1.2.1.1Gene3D:3.40.50.620EntrezGene:8078292UniProt:C5Z2C5
InterPro:Crypto/Photolyase_FAD-like_sfInterPro:Crypto/Photolyase_N_sfInterPro:Cryptochr/Photolyase_FAD-bdInterPro:Cryptochrome/DNA_photolyase_1InterPro:Cryptochrome_plnInterPro:DNA_photolyase_1_CS_C
InterPro:DNA_photolyase_NEnsemblPlants:EER88355ProteinID:EER88355ProteinID:EER88355.1GO:GO:0000003GO:GO:0000166
GO:GO:0003674GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005737GO:GO:0005773
GO:GO:0006139GO:GO:0006325GO:GO:0006338GO:GO:0006950GO:GO:0007154GO:GO:0007165
GO:GO:0007275GO:GO:0007623GO:GO:0008150GO:GO:0008152GO:GO:0009414GO:GO:0009416
GO:GO:0009605GO:GO:0009606GO:GO:0009607GO:GO:0009628GO:GO:0009637GO:GO:0009638
GO:GO:0009646GO:GO:0009653GO:GO:0009719GO:GO:0009785GO:GO:0009791GO:GO:0009882
GO:GO:0009908GO:GO:0009909GO:GO:0009911GO:GO:0009987GO:GO:0010075GO:GO:0010118
GO:GO:0010244GO:GO:0010617GO:GO:0016043GO:GO:0016604GO:GO:0019725GO:GO:0038023
GO:GO:0040007GO:GO:0042752GO:GO:0042802GO:GO:0048574GO:GO:0051607GO:GO:0071949
GO:GO:0072387GO:GO:1901371GO:GO:1902347GO:GO:2000028GO:GO:2000379InterPro:IPR006050
InterPro:IPR014729PFAM:PF00875PFAM:PF03441PRINTS:PR00147ScanProsite:PS00394PFscan:PS51645
PANTHER:PTHR11455PANTHER:PTHR11455:SF44InterPro:Rossmann-like_a/b/a_foldEnsemblPlantsGene:SORBI_3010G138000SUPFAM:SSF48173SUPFAM:SSF52425
unigene:Sbi.7820TIGRFAMs:TIGR02766UniParc:UPI0001A88FC0RefSeq:XP_002436988.1SEG:seg:
Description
hypothetical protein
Coordinates
chr10:+:22156857..22163945
Molecular Weight (calculated)
74172.8 Da
IEP (calculated)
5.778
GRAVY (calculated)
-0.384
Length
654 amino acids
Sequence
(BLAST)
001: MAGSGKTVVW FRRDLRIHDN PALAAAAKEG SVLPLFIWCP ADYEQYYPGR CSRWWLKQSL AHLGKSLELL GCPLVLIRAE DSTLATLLEC VHCISATRVV
101: YNRLYDPISL VLDDKIKNEL SAHGISVQSF NGDLLYEPWD VYDENGQAFT SFNKYWEKCM NVPIEISQYL APTRLVAAPG LANVRCCSID DLGLESSKDV
201: ESSNALLSRA WSPGWRNAEN MLEEFLSCGL LEYSKHGMKV GGTTTSLLSP YLHFGELSVR KVYQLVTMHH VKWQNEGKSE AEESVRLFLR SIGFREYSRY
301: LCFNFPFTHE RSFLGNLKHY PWLLDEDRFK SWRQGMTGYP LVDAGMRELW ATGWTHNRIR VIVSSFAVKC LQIPWIWGMK YFWDVLLDAD LESDILGWQY
401: ISGSLPDGHE LSRLDNPEVQ GQKYDPDGEY VRTWIPELAR MPTEWIHCPW SAPNSILQVA GVELGFNYPK PIVELHMARE CLDDAISTMW QLDTAAKLAA
501: LDGEVVDDNL NNIRSFDIPK VVLKKKLSPS TSSMNKRVLS TNGKNEKSQP TEVKAPYKQI IRDDMINASN MDDTGSTANL QVTRKRSRSD SAFNVPSSSS
601: SLVMESRIHD NDSCSVRYSG YLQQTADRDD TDKVEDNDSE DSGTSISRPS KRPA
Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)
001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK
Arabidopsis Description
CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.