CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88355
EER93439
EER93752
EER94678
EER94971
EER98661	cytosol, nucleus
EES01496
EES03151	cytosol
EES05366
EES06576
EES07113
EES16391
EES18506	cytosol
EES18807	cytosol
KXG19625
KXG21255	nucleus
KXG24924	cytosol, nucleus
KXG27642
KXG28344
KXG30738
KXG31183
KXG32305	nucleus
KXG33380	cytosol
OQU80099

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18790.1	EER88355	AT1G04400.1	11089975
AT2G18790.1	EER94971	AT2G18790.1	15273290
AT2G18790.1	EER94971	AT2G18790.1	19286967
AT2G18790.1	EES03151	AT2G26190.1	23964902
AT2G18790.1	EES18807	AT2G26190.1	23964902
AT2G18790.1	EES03151	AT2G26190.1	23964902
AT2G18790.1	EES18807	AT2G26190.1	23964902
AT2G18790.1	KXG31183	AT2G32950.1	11752373
AT2G18790.1	EER93752	AT2G34590.1	23964902
AT2G18790.1	EES16391	AT2G34590.1	23964902
AT2G18790.1	EES18506	AT2G42400.1	22904146
AT2G18790.1	KXG33380	AT2G42400.1	22904146
AT2G18790.1	EES18506	AT2G42400.1	22904146
AT2G18790.1	KXG33380	AT2G42400.1	22904146
AT2G18790.1	OQU80099	AT2G45290.1	23964902
AT2G18790.1	KXG21255	AT2G46970.1	23964902
AT2G18790.1	KXG32305	AT2G46970.1	23964902
AT2G18790.1	KXG21255	AT2G46970.1	23964902
AT2G18790.1	KXG32305	AT2G46970.1	23964902
AT2G18790.1	KXG28344	AT4G13940.1	23964902
AT2G18790.1	EER94971	AT4G16250.1	15273290
AT2G18790.1	EER94971	AT4G16250.1	19286967
AT2G18790.1	EES05366	AT4G20360.1	23964902
AT2G18790.1	EER94678	AT5G15450.1	23964902
AT2G18790.1	EER93439	AT5G35840.1	15273290
AT2G18790.1	EER93439	AT5G35840.1	19286967
AT2G18790.1	EES01496	AT5G46240.1	23964902
AT2G18790.1	EES06576	AT5G46240.1	23964902
AT2G18790.1	EER98661	AT5G48300.1	23964902
AT2G18790.1	KXG24924	AT5G48300.1	23964902
AT2G18790.1	EER98661	AT5G48300.1	23964902
AT2G18790.1	KXG24924	AT5G48300.1	23964902
AT2G18790.1	EER98661	AT5G48300.1	23964902
AT2G18790.1	KXG24924	AT5G48300.1	23964902
AT2G18790.1	EES07113	AT5G60600.1	23964902
AT2G18790.1	KXG19625	AT5G65090.1	23964902
AT2G18790.1	KXG27642	AT5G65090.1	23964902
AT2G18790.1	KXG30738	AT5G65090.1	23964902
AT4G16250.1	EER94971	AT2G18790.1	15273290
AT4G16250.1	EER94971	AT2G18790.1	19286967
AT4G16250.1	EER94971	AT4G16250.1	15273290
AT4G16250.1	EER94971	AT4G16250.1	19286967
AT4G16250.1	EER93439	AT5G35840.1	19286967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047632_P001	Maize	plastid	92.7	93.65
Os03t0309200-01	Rice	nucleus, plasma membrane	86.25	90.71
HORVU4Hr1G053400.1	Barley	plasma membrane	88.79	89.55
TraesCS4B01G182400.1	Wheat	plastid	88.62	89.54
TraesCS4A01G122500.2	Wheat	plastid	88.62	89.54
TraesCS4D01G183400.1	Wheat	plastid	88.45	89.52
VIT_05s0077g00940.t01	Wine grape	cytosol	74.53	77.77
PGSC0003DMT400061712	Potato	cytosol, plastid	72.67	75.75
Solyc01g059870.2.1	Tomato	cytosol	71.31	74.27
GSMUA_Achr3P08340_001	Banana	nucleus	68.42	74.01
KRH36969	Soybean	nucleus	71.05	73.61
KRH11936	Soybean	nucleus	71.73	73.54
CDX92112	Canola	cytosol	70.54	73.28
CDX95888	Canola	cytosol	70.8	71.4
CDX75900	Canola	cytosol	69.86	71.26
AT2G18790.1	Thale cress	nucleus	70.88	71.25
Bra022192.1-P	Field mustard	cytosol	71.14	70.3
PGSC0003DMT400069974	Potato	mitochondrion	67.06	70.22
Solyc05g053410.2.1	Tomato	nucleus, plastid	66.72	70.12
AT4G16250.1	Thale cress	plastid	67.91	68.73
Bra001650.1-P	Field mustard	cytosol	7.89	60.78
CDX82382	Canola	cytosol	9.08	58.15
EER93439	Sorghum	plastid	50.51	52.42
OQU91090	Sorghum	nucleus	46.52	48.45
CDY42549	Canola	cytosol	7.98	41.59
OQU91089	Sorghum	cytosol	5.94	39.11

Protein Annotations

Gene3D:1.10.287.130	MapMan:26.1.1.1	MapMan:26.4.1.2	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40
Gene3D:3.30.565.10	EntrezGene:8081072	ProteinID:AAR30900.1	ProteinID:AAR30901.1	ProteinID:AAR30902.1	ProteinID:AAR30904.1
ncoils:Coil	EnsemblPlants:EER94971	ProteinID:EER94971	ProteinID:EER94971.1	InterPro:GAF	InterPro:GAF-like_dom_sf
GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009584	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009881
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0017006	GO:GO:0018298	GO:GO:0019538
GO:GO:0023014	GO:GO:0038023	GO:GO:0042803	GO:GO:0050896	InterPro:HATPase_C	InterPro:HATPase_C_sf
InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom	InterPro:IPR000014	InterPro:IPR005467	InterPro:IPR016132
InterPro:IPR029016	InterPro:IPR036890	InterPro:PAS	InterPro:PAS-like_dom_sf	InterPro:PAS_2	InterPro:PAS_fold
PFAM:PF00360	PFAM:PF00512	PFAM:PF00989	PFAM:PF01590	PFAM:PF02518	PFAM:PF08446
PIRSF:PIRSF000084	PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046	PFscan:PS50109	PFscan:PS50112
PANTHER:PTHR43719	PANTHER:PTHR43719:SF12	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_A-E
InterPro:Phytochrome_cen-reg	UniProt:Q6S527	SMART:SM00065	SMART:SM00091	SMART:SM00387	SMART:SM00388
EnsemblPlantsGene:SORBI_3001G394400	SUPFAM:SSF47384	SUPFAM:SSF55781	SUPFAM:SSF55785	SUPFAM:SSF55874	unigene:Sbi.10719
TIGRFAMs:TIGR00229	UniParc:UPI00002312DE	RefSeq:XP_002467973.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:68034103..68043358

Molecular Weight (calculated)

129054.0 Da

IEP (calculated)

6.065

GRAVY (calculated)

-0.167

Length

1178 amino acids

Sequence
(BLAST)

0001: MASGSRATPT RSPSSARPEA PRHAHHHHHH HSQSSGGSTS RAGGGGGGGG GGGGTAATAT ATATESVSKA VAQYTLDARL HAVFEQSGAS GRSFDYSQSL
0101: RAPPTPSSEQ QIAAYLSRIQ RGGHIQPFGC TLAVADDSSF RLLAFSENAA DLLDLSPHHS VPSLDSAAPP PVSLGADARL LFSPSSAVLL ERAFAAREIS
0201: LLNPLWIHSR VSSKPFYAIL HRIDVGVVID LEPARTEDPA LSIAGAVQSQ KLAVRAISRL QALPGGDIKL LCDTVVEHVR ELTGYDRVMV YRFHEDEHGE
0301: VVAESRRDNL EPYLGLHYPA TDIPQASRFL FRQNRVRMIA DCHATPVRVI QDPGMSQPLC LVGSTLRAPH GCHAQYMANM GSIASLVMAV IISSGGDDEQ
0401: TGRGGISSAM KLWGLVVCHH TSPRCIPFPL RYACEFLMQA FGLQLNMELQ LAHQLSEKHI LRTQTLLCDM LLRDSPTGIV TQSPSIMDLV KCDGAALYYH
0501: GKYYPLGVTP TESQIKDIIE WLTVCHGDST GLSTDSLADA GYLGAAALGD AVCGMAVAYI TPSDYLFWFR SHTAKEIKWG GAKHHPEDKD DGQRMHPRSS
0601: FKAFLEVVKS RSLPWENAEM DAIHSLQLIL RDSFRDAAEG TSNSKAIVNG QVQLGELELR GINELSSVAR EMVRLIETAT VPIFAVDTDG CINGWNAKIA
0701: ELTGLSVEEA MGKSLVNDLI FKESEEIVEK LLSRALRGEE DKNVEIKLKT FGSEQSNGAI FVIVNACSSR DYTQNIVGVC FVGQDVTGQK VVMDKFINIQ
0801: GDYKAIVHNP NPLIPPIFAS DENTSCSEWN TAMEKLTGWS RGEVVGKFLI GEVFGSFCRL KGPDALTKFM VVIHNAIGGQ DYEKFPFSFF DKNGKYVQAL
0901: LTANTRSKMD GKSIGAFCFL QIASAEIQQA FEIQRQQEKK CYARMKELAY ICQEIKNPLS GIRFTNSLLQ MTDLNDDQRQ FLETCSACEK QMSKIVKDAT
1001: LQSIEDGSLV LEKSEFSFGD VMNAVVSQAM LLLRERDLQL IRDIPDEIKD ASAYGDQFRI QQVLADFLLS MVRSAPSENG WVEIQVRPNV KQNSDGTDTE
1101: LFIFRFACPG EGLPADIVQD MFSNSQWSTQ EGVGLSTCRK ILKLMGGEVQ YIRESERSFF LIVLELPQPR PAADREIS

Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)

0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY

Arabidopsis Description

PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.