CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88729
EER90124
EER98905
EES04642
KXG35639

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	EER88729	AT2G25000.1	21798944
AT5G15450.1	EER90124	AT2G25000.1	21798944
AT5G15450.1	EER98905	AT2G25000.1	21798944
AT5G15450.1	EES04642	AT2G25000.1	21798944
AT5G15450.1	KXG35639	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047302_P002	Maize	plastid	96.24	97.13
Zm00001d029557_P001	Maize	plastid	96.54	97.03
Os03t0426900-01	Rice	plastid	91.56	92.02
TraesCSU01G131300.1	Wheat	plastid	89.52	90.63
TraesCS5A01G547300.1	Wheat	golgi, plastid	89.52	90.35
TraesCS4B01G380800.1	Wheat	plastid	89.42	90.15
HORVU4Hr1G090440.2	Barley	plastid	89.32	82.99
GSMUA_Achr6P16670_001	Banana	plastid	77.31	81.11
VIT_14s0108g01500.t01	Wine grape	plastid	80.37	80.94
KRH01254	Soybean	nucleus, plastid	79.25	79.98
KRH18417	Soybean	nucleus	79.55	79.96
KRG93616	Soybean	nucleus	79.45	79.86
KRH44979	Soybean	nucleus, plastid	79.04	79.77
Bra023518.1-P	Field mustard	plastid	77.72	79.34
PGSC0003DMT400003652	Potato	cytosol, plastid	78.74	79.06
AT5G15450.1	Thale cress	plastid	77.72	78.93
Solyc02g088610.2.1	Tomato	plastid	78.43	78.67
CDX90991	Canola	plastid	77.11	78.63
CDX85551	Canola	plastid	52.29	78.59
Bra008698.1-P	Field mustard	plastid	77.62	78.42
CDY26423	Canola	plastid	77.62	78.42
CDX69524	Canola	plastid	77.62	78.42
CDX85552	Canola	cytosol	20.04	77.25
EES06386	Sorghum	mitochondrion	66.73	66.26
EES19828	Sorghum	nucleus	45.57	49.07
EES01468	Sorghum	nucleus	44.86	48.2
EES13207	Sorghum	cytosol	18.92	44.39
OQU85081	Sorghum	mitochondrion, plastid	32.04	43.87
KXG23307	Sorghum	plastid	39.88	42.56
EES12052	Sorghum	plastid	39.78	42.45
OQU79828	Sorghum	plastid	33.06	41.99
OQU81585	Sorghum	cytosol	27.37	41.64
OQU81478	Sorghum	cytosol	34.89	40.31
EES05165	Sorghum	plastid	36.11	37.1

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	EntrezGene:8066281	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	UniProt:C5WWH8	InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2
InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	EnsemblPlants:EER94678	ProteinID:EER94678
ProteinID:EER94678.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009408	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0016485	GO:GO:0019538	GO:GO:0042026
InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF144	SMART:SM00382
SMART:SM01086	EnsemblPlantsGene:SORBI_3001G333500	SUPFAM:SSF52540	SUPFAM:SSF81923	unigene:Sbi.3995	SignalP:SignalP-noTM
TIGRFAMs:TIGR03346	UniParc:UPI0001A8319F	RefSeq:XP_002467680.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:62224868..62233524

Molecular Weight (calculated)

109414.0 Da

IEP (calculated)

7.347

GRAVY (calculated)

-0.399

Length

983 amino acids

Sequence
(BLAST)

001: MAAAPPLSLS ADVLSFLPSA SASAPAAAAP TPVVAAAWGA ARAGAVRGKA ALRTTTRGGR GGLLAPVVGG KPRRTPLSVR CNATSRDGRI TQQEFTDMAW
101: QAIVSSPEVA KESKHQIVET EHLMKSLLEQ RNGLARRIFS KAGVDNTRLL DAAEKFIQRQ PKVLGEEPGS MLGRDLEALI QRARDFKKEY GDSYVSVEHL
201: VLGFAEDKRF GKQLFKDFQV TVKTLKSAIE SIRGKQNVMD QDPEGKYEAL EKYGKDLTAM ARQGKLDPVI GRDDEIRRCI QILSRRTKNN PVLIGEPGVG
301: KTAIAEGLAQ RIVQGDVPQA LTNRRLIALD MGALIAGAKY RGEFEDRLKA VLKEVTDSDG QTILFIDEIH TVVGAGATNG AMDAGNLLKP MLGRGELRCI
401: GATTLDEYRK YIEKDPALER RFQQVYVDQP SVEDTISILR GLRERYELHH GVRISDSALV AAAVLSDRYI SGRFLPDKAI DLVDESAAKL KMEITSKPTA
501: LDEIDRAVLK LEMERLSLTN DTDKASKDRL SRLEAELSLL KDKQRQLTER WEHEKSVMTK IQSIKEEIDR VNVEIQQAER EYDLNRAAEL KYGSLNALQR
601: QLQMTEKELD EYQSSGKSML REEVTQDDIA EIVSRWTGIP VSKLKQSDRE KLLFLEEELH KRVVGQDPAV KAVAEAIQRS RAGLSDPNRP IASFMFMGPT
701: GVGKTELAKA LAAFMFNTEE AVVRIDMSEY MEKHSVSRLI GAPPGYVGYE EGGQLTEAVR RRPYSVVLFD EIEKAHSDVF NVFLQILDDG RVTDSQGRKV
801: SFTNTIIIMT SNVGSQYILN MDEEVGSSDS AYENIKKRVM DAARSVFRPE FMNRVDEYIV FKPLEREQIN SIVKLQLARV QKRIADRKIK LEVSPGAIEF
901: LGSLGYDPNY GARPVKRVIQ QYVENELAKG ILRGDFKDED SIFVDTQVTV PSNGQLPQQK LVFRKVGEQS KAAAEDEKFL PAV

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.