Factsheet for Bra008698.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010220.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	Bra010220.1-P	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69524	Canola	plastid	100.0	100.0
CDY26423	Canola	plastid	99.38	99.38
Bra023518.1-P	Field mustard	plastid	95.07	96.05
AT5G15450.1	Thale cress	plastid	94.86	95.35
KRH01254	Soybean	nucleus, plastid	84.17	84.09
KRH44979	Soybean	nucleus, plastid	83.86	83.78
VIT_14s0108g01500.t01	Wine grape	plastid	83.35	83.09
PGSC0003DMT400003652	Potato	cytosol, plastid	83.04	82.53
GSMUA_Achr6P16670_001	Banana	plastid	79.34	82.39
Solyc02g088610.2.1	Tomato	plastid	82.94	82.35
KRH18417	Soybean	nucleus	82.53	82.11
KRG93616	Soybean	nucleus	82.43	82.0
Os03t0426900-01	Rice	plastid	79.24	78.83
Zm00001d047302_P002	Maize	plastid	78.42	78.34
Zm00001d029557_P001	Maize	plastid	78.73	78.32
TraesCSU01G131300.1	Wheat	plastid	77.6	77.75
EER94678	Sorghum	plastid	78.42	77.62
TraesCS4B01G380800.1	Wheat	plastid	77.6	77.44
TraesCS5A01G547300.1	Wheat	golgi, plastid	77.49	77.41
HORVU4Hr1G090440.2	Barley	plastid	77.7	71.46
Bra007816.1-P	Field mustard	mitochondrion	65.88	65.81
Bra032044.1-P	Field mustard	mitochondrion	48.82	59.82
Bra003807.1-P	Field mustard	nucleus	43.99	48.53
Bra015922.1-P	Field mustard	nucleus	45.43	48.52
Bra018030.1-P	Field mustard	mitochondrion	38.75	42.45
Bra029922.1-P	Field mustard	mitochondrion	38.95	40.84
Bra022751.1-P	Field mustard	plastid	38.95	40.8
Bra029193.1-P	Field mustard	plastid	35.56	36.69

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
EnsemblPlantsGene:Bra008698	EnsemblPlants:Bra008698.1	EnsemblPlants:Bra008698.1-P	InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0016485	GO:GO:0019538	GO:GO:0042026	InterPro:IPR036628	UniProt:M4CWV1
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF144	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	TIGRFAMs:TIGR03346	UniParc:UPI0002544E0B	SEG:seg	:

Description

AT5G15450 (E=0.0) APG6, CLPB3, CLPB-P | CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding

Coordinates

chrA10:+:13441603..13445289

Molecular Weight (calculated)

109181.0 Da

IEP (calculated)

5.752

GRAVY (calculated)

-0.449

Length

973 amino acids

Sequence
(BLAST)

001: MATAKTTATA AFSGIVGGVG SDSRKVSSFS HLQPSVAFPA KPTSFKALKL KQSARLTRRL QHQPFVVRCE ASSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT DKFIQRQPKV YGEAAGSMLG RDLEGLFQRA RQYKKDLGDS YVSVEHLVLA FVDDKRFGKQ
201: LFRDFQISEK SLKTAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQTI LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTVSILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRAVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHRRV IGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YLFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTEVVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQYILNNNA DDEGSELGYE TIKQRVMDAA RSIFRPEFMN RVDEYIVFQP LDREQINSIV RLQLARVQKR IADRKMKIEI TDAAVDLLGS LGYDPNYGAR
901: PVKRVIQQNI ENELAKGILR GDFKEEDGIL IDTEVTAFSN GQLPQQKLTF KKIASETADA EKEEEEAFSK QSN

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.