CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05350
KRH15674
KRH52329
KRH61669

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	KRH05350	AT2G25000.1	21798944
AT5G15450.1	KRH15674	AT2G25000.1	21798944
AT5G15450.1	KRH52329	AT2G25000.1	21798944
AT5G15450.1	KRH61669	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44979	Soybean	nucleus, plastid	98.15	98.15
KRH18417	Soybean	nucleus	89.32	88.96
KRG93616	Soybean	nucleus	88.81	88.45
VIT_14s0108g01500.t01	Wine grape	plastid	87.78	87.6
CDX85552	Canola	cytosol	22.48	85.88
Bra023518.1-P	Field mustard	plastid	83.98	84.94
Solyc02g088610.2.1	Tomato	plastid	85.42	84.9
PGSC0003DMT400003652	Potato	cytosol, plastid	85.32	84.88
CDX90991	Canola	plastid	83.37	84.23
Bra008698.1-P	Field mustard	plastid	84.09	84.17
CDX69524	Canola	plastid	84.09	84.17
AT5G15450.1	Thale cress	plastid	83.57	84.09
CDY26423	Canola	plastid	83.78	83.86
CDX85551	Canola	plastid	55.95	83.33
GSMUA_Achr6P16670_001	Banana	plastid	79.88	83.03
Zm00001d047302_P002	Maize	plastid	79.77	79.77
Zm00001d029557_P001	Maize	plastid	79.98	79.65
EER94678	Sorghum	plastid	79.98	79.25
Os03t0426900-01	Rice	plastid	79.47	79.14
TraesCSU01G131300.1	Wheat	plastid	78.13	78.37
TraesCS5A01G547300.1	Wheat	golgi, plastid	78.13	78.13
TraesCS4B01G380800.1	Wheat	plastid	77.93	77.85
KRH52355	Soybean	cytosol, mitochondrion	48.56	72.66
HORVU4Hr1G090440.2	Barley	plastid	78.34	72.12
KRH61688	Soybean	mitochondrion	67.76	67.76
KRH63249	Soybean	mitochondrion	11.81	59.28
KRH54672	Soybean	endoplasmic reticulum	41.17	53.25
KRH03117	Soybean	cytosol	24.33	52.2
KRH46928	Soybean	endoplasmic reticulum	6.26	51.26
KRH56831	Soybean	endoplasmic reticulum	46.1	49.29
KRH63851	Soybean	plastid	41.17	43.49
KRH54115	Soybean	plastid	41.07	43.38
KRH59753	Soybean	endoplasmic reticulum	40.86	43.31
KRH41069	Soybean	mitochondrion, plastid	40.66	43.09
KRH63903	Soybean	plastid	36.45	37.53
KRH54048	Soybean	plastid	36.24	37.16

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100801296	MapMan:26.4.2.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:ACUP02011509	InterPro:ATPase_AAA_core	InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2
InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G264400	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0016485	GO:GO:0019538	GO:GO:0042026	UniProt:I1N4I0	InterPro:IPR036628
EnsemblPlants:KRH01254	ProteinID:KRH01254	ProteinID:KRH01254.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861
PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638
PANTHER:PTHR11638:SF144	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	TIGRFAMs:TIGR03346
UniParc:UPI000233EB43	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:54954462..54961006

Molecular Weight (calculated)

109775.0 Da

IEP (calculated)

6.452

GRAVY (calculated)

-0.428

Length

974 amino acids

Sequence
(BLAST)

001: MASTSSFSLS HAVVPFSCNT KHGHLSHNLL YLSFAKPISL KPLQSLPFNK RHPFANGFQR IRRNSSPFIV RCEASSGRIT QQEFTEMAWQ AIVSSPEVAK
101: ENKHQIVETE HLMKALLEQK NGLARRIFSK VGVDNTRLLE ATDKYIQRQP KVLGESSGSM LGRDLEALIQ RARDHKKKYG DSFVSVEHLV LAFTQDQRFG
201: KQFFRDFQIS EPALKSAIES VRGRQSVIDQ DPEGKYEALE KYGKDLTAMA KAGKLDPVIG RDDEIRRCIQ ILSRRTKNNP VLIGEPGVGK TAISEGLAQR
301: IVQGDVPQAL MDRRLISLDM GALIAGAKYR GEFEDRLKAV LKEVTESDGQ TILFIDEIHT VVGAGATNGA MDAGNLLKPM LGRGELRCIG ATTLDEYRKY
401: IEKDPALERR FQQVYVDQPT VEDTISILRG LRERYELHHG VRISDSALVE AAILSDRYIS GRFLPDKAID LVDEAAAKLK MEITSKPTAL DEINRSVLKL
501: EMERLSLMND TDKASKDRLN RLEAELSLLK EKQAELTEQW EHEKSVMTRI QSIKEEIDRV NLEIQQAERE YDLNRAAELK YGSLNSLQRQ LESAEKELDE
601: YMNSGKSMLR EEVTGNDIAE IVSKWTGIPV SKLQQSEREK LLHLEEVLHK RVVGQDPAVK AIAEAIQRSR AGLSDPHRPI ASFMFMGPTG VGKTELAKAL
701: AAYLFNTEEA LVRIDMSEYM EKHAVSRLIG APPGYVGYEE GGQLTEIVRR RPYAVILFDE IEKAHADVFN VFLQILDDGR VTDSQGRTVS FTNTVIIMTS
801: NVGSQYILNT DDDTTPKELA YETIKQRVMD AARSIFRPEF MNRVDEYIVF QPLDREQISS IVRLQLERVQ KRIADRKMKI QVTDAAVQLL GSLGYDPNYG
901: ARPVKRVIQQ NVENELAKGI LRGEFKEEDA IIIDTELTAF TNGQLPQQKL VFKKLAADSE STPQDTLEPF PQAP

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.