Factsheet for GSMUA_Achr6P16670_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P10080_001
GSMUA_Achr2P05100_001
GSMUA_Achr3P13440_001
GSMUA_Achr4P01930_001
GSMUA_Achr5P16460_001
GSMUA_Achr7P05200_001
GSMUA_Achr7P16090_001
GSMUA_Achr7P19340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	GSMUA_Achr10P...	AT2G25000.1	21798944
AT5G15450.1	GSMUA_Achr10P...	AT2G25000.1	21798944
AT5G15450.1	GSMUA_Achr11P...	AT2G25000.1	21798944
AT5G15450.1	GSMUA_Achr1P10080_001	AT2G25000.1	21798944
AT5G15450.1	GSMUA_Achr2P05100_001	AT2G25000.1	21798944
AT5G15450.1	GSMUA_Achr3P13440_001	AT2G25000.1	21798944
AT5G15450.1	GSMUA_Achr4P01930_001	AT2G25000.1	21798944
AT5G15450.1	GSMUA_Achr5P16460_001	AT2G25000.1	21798944
AT5G15450.1	GSMUA_Achr7P05200_001	AT2G25000.1	21798944
AT5G15450.1	GSMUA_Achr7P16090_001	AT2G25000.1	21798944
AT5G15450.1	GSMUA_Achr7P19340_001	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g01500.t01	Wine grape	plastid	84.74	81.35
KRH44979	Soybean	nucleus, plastid	83.14	79.98
KRH01254	Soybean	nucleus, plastid	83.03	79.88
Bra023518.1-P	Field mustard	plastid	82.07	79.85
PGSC0003DMT400003652	Potato	cytosol, plastid	83.24	79.67
CDX90991	Canola	plastid	81.86	79.56
AT5G15450.1	Thale cress	plastid	82.07	79.44
Solyc02g088610.2.1	Tomato	plastid	83.03	79.39
Bra008698.1-P	Field mustard	plastid	82.39	79.34
CDX69524	Canola	plastid	82.39	79.34
CDY26423	Canola	plastid	82.18	79.14
KRH18417	Soybean	nucleus	82.5	79.04
KRG93616	Soybean	nucleus	82.39	78.94
CDX85551	Canola	plastid	54.96	78.75
Zm00001d047302_P002	Maize	plastid	81.32	78.23
CDX85552	Canola	cytosol	21.24	78.04
Zm00001d029557_P001	Maize	plastid	81.11	77.71
TraesCSU01G131300.1	Wheat	plastid	80.36	77.55
TraesCS4B01G380800.1	Wheat	plastid	80.47	77.33
EER94678	Sorghum	plastid	81.11	77.31
TraesCS5A01G547300.1	Wheat	golgi, plastid	80.36	77.31
Os03t0426900-01	Rice	plastid	80.58	77.2
HORVU4Hr1G090440.2	Barley	plastid	80.9	71.64
GSMUA_Achr9P22420_001	Banana	cytosol	65.31	69.31
GSMUA_Achr6P08040_001	Banana	cytosol	37.03	53.88
GSMUA_Achr1P13710_001	Banana	cytosol	42.16	46.42
GSMUA_Achr3P16240_001	Banana	cytosol	41.62	45.77
GSMUA_Achr6P16470_001	Banana	plastid	40.66	43.49
GSMUA_Achr3P18630_001	Banana	plastid	40.98	42.52
GSMUA_Achr8P09160_001	Banana	plastid	40.88	41.45
GSMUA_Achr6P23780_001	Banana	cytosol	35.65	39.53
GSMUA_Achr10P...	Banana	plastid	34.79	32.9
GSMUA_AchrUn_...	Banana	plastid	37.78	30.23
GSMUA_Achr2P12140_001	Banana	plastid	4.48	18.34
GSMUA_Achr6P08050_001	Banana	cytosol	2.13	15.75

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009408	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G16670_001	EnsemblPlants:GSMUA_Achr6P16670_001
EnsemblPlants:GSMUA_Achr6T16670_001	InterPro:IPR036628	UniProt:M0T7L5	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861
PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638
PANTHER:PTHR11638:SF144	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0002951D19
SEG:seg	:	:	:	:	:

Description

Chaperone protein ClpB 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16670_001]

Coordinates

chr6:+:11094409..11103629

Molecular Weight (calculated)

105552.0 Da

IEP (calculated)

6.546

GRAVY (calculated)

-0.458

Length

937 amino acids

Sequence
(BLAST)

001: MAAVFCAPHH HLPVLPLPSR KSGIRSFSGS LALPSPSKGR ASVRPLRVLN WSETLGRSDL FVSKSAGRVG NRSRSVVVRC EANKDGRITQ QEFTEMSWQA
101: IVSAPEIAKE SKHQIVETEH LMKSLLEQKN GLARRIFSKA GVDNTKLLEA TDRFIQRQPK VLGETAGSML GRDIETLIQR AREYKKEYGD SFVSVEHIVL
201: SYADDRRFGR QLFKDFQISI NTLKSAVQAI RGRQNVIDQD PEGKYEALEK YGKDLTAMAR EGKLDPVIGR DDEIRRCIQI LSRRTKNNPV LIGEPGVGKT
301: AISEGLAQRI VQGDVPQALM NRRLISLDMG ALIAGAKYRG EFEDRLKAVL REVTDSEGQI VLFIDEIHTV VGAGATNGAM DAGNLLKPML GRGELRCIGA
401: TTLDEYRKYI EKDPALERRF QQVYVDQPTV EDTVSILRGL RERYELHHGV RISDSALVEA AILSDRYISG RFLPDKAIDL VDEAAAKLKM EITSKPTALD
501: EINRLNRLEA ELSLLKEKQA ELTEQWEHEK SVMTRIQSIK EEIDRVNLEI QQAEREYDLN RAAELKYGSL NSLQRQLQQA EKELTEYQNS GKSMLREEVT
601: GNDIAEIVSK WTGIPVSKLQ QSEREKLLHL EEELHKRVVG QDPAVRAVAE AIQRSRAGLS DPNRPIASFM FMGPTGVGKT ELAKTLASYM FNTEEALVRI
701: DMSEYMEKHA VSRLIGAPPG YVGYEEGGQL TETVRRRPYA VILFDEIEKA HSDVFNVFLQ ILDDGRVTDS QGRTVSFTNT VIIMTSNVGS QYILNMNGET
801: ESRDSTYESI KQRVMDAARS LFRPEFMNRV DEYIVFQPLD REQINSIVKL QLERVQKRVA DRKIKIEVTD AAVEFLGNLG YDPNYGARPV KRVIQQNVEN
901: ELAKGILRGD FKDEDTVLVD TEVTPSSEDQ KAFLPSR

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.