Factsheet for GSMUA_Achr6P08050_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037525	Potato	plastid	93.7	46.85
CDX84888	Canola	cytosol	98.43	15.11
CDY64710	Canola	cytosol	95.28	14.72
GSMUA_Achr6P16470_001	Banana	plastid	97.64	14.16
GSMUA_Achr3P18630_001	Banana	plastid	100.0	14.06
TraesCS2A01G287300.2	Wheat	plastid	97.64	13.85
TraesCS6D01G183600.2	Wheat	cytosol, plastid	98.43	13.65
TraesCS6A01G195200.1	Wheat	plastid	98.43	13.65
Bra018030.1-P	Field mustard	mitochondrion	95.28	13.63
Os12t0230100-01	Rice	plastid	98.43	13.6
KXG23307	Sorghum	plastid	98.43	13.57
EES12052	Sorghum	plastid	98.43	13.57
CDY45800	Canola	plastid	98.43	13.57
Zm00001d024009_P001	Maize	plastid	98.43	13.57
Solyc12g042060.1.1	Tomato	plastid	98.43	13.54
PGSC0003DMT400037527	Potato	cytosol	98.43	13.54
TraesCS6B01G233800.1	Wheat	plastid	97.64	13.54
HORVU2Hr1G071080.3	Barley	plastid	97.64	13.52
TraesCS2B01G304200.1	Wheat	golgi	97.64	13.52
TraesCS2D01G285800.1	Wheat	plastid	97.64	13.52
Zm00001d003894_P004	Maize	plastid	97.64	13.46
Zm00001d025273_P019	Maize	plastid	97.64	13.46
AT5G50920.1	Thale cress	plastid	98.43	13.46
Bra022751.1-P	Field mustard	plastid	98.43	13.46
KRH54115	Soybean	plastid	97.64	13.45
KRH63851	Soybean	plastid	97.64	13.45
PGSC0003DMT400036961	Potato	plastid	97.64	13.41
TraesCS5D01G118700.1	Wheat	plastid	96.85	13.37
TraesCS5B01G112500.1	Wheat	plastid	96.85	13.37
TraesCS5A01G118900.1	Wheat	unclear	96.85	13.37
GSMUA_Achr8P09160_001	Banana	plastid	96.85	13.31
Solyc03g118340.2.1	Tomato	nucleus	96.85	13.28
KRH59753	Soybean	endoplasmic reticulum	96.06	13.28
KRH41069	Soybean	mitochondrion, plastid	95.28	13.17
CDY05878	Canola	mitochondrion	96.06	13.09
CDX83052	Canola	mitochondrion	95.28	13.05
Bra029922.1-P	Field mustard	mitochondrion	95.28	13.04
CDX68504	Canola	mitochondrion	95.28	13.04
AT3G48870.3	Thale cress	cytosol, plastid	96.85	12.92
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	98.43	12.74
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	96.85	12.64
PGSC0003DMT400054236	Potato	plastid	88.19	12.31
GSMUA_AchrUn_...	Banana	plastid	99.21	10.76
GSMUA_Achr6P23780_001	Banana	cytosol	29.13	4.38
GSMUA_Achr10P...	Banana	plastid	22.05	2.83
GSMUA_Achr9P22420_001	Banana	cytosol	16.54	2.38
GSMUA_Achr1P13710_001	Banana	cytosol	15.75	2.35
GSMUA_Achr3P16240_001	Banana	cytosol	14.96	2.23
GSMUA_Achr6P16670_001	Banana	plastid	15.75	2.13
TraesCS4B01G082900.1	Wheat	mitochondrion	10.24	1.73
Os04t0397100-01	Rice	plastid	1.57	0.5
GSMUA_Achr6P08040_001	Banana	cytosol	1.57	0.31
GSMUA_Achr2P12140_001	Banana	plastid	0.0	0.0
VIT_07s0005g05810.t01	Wine grape	cytosol	0.0	0.0
VIT_16s0100g00180.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr6P08050_001	EnsemblPlants:GSMUA_Achr6T08050_001	EnsemblPlantsGene:GSMUA_Achr6G08050_001	Gene3D:1.10.1780.10	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	InterPro:Clp_N	InterPro:Clp_N_dom_sf	InterPro:IPR036628	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19
PFAM:PF02861	SEG:seg	SUPFAM:SSF81923	UniParc:UPI000294FEBA	UniProt:M0T554	MapMan:35.1

Description

ATP-dependent Clp protease ATP-binding subunit clpA homolog [Source:GMGC_GENE;Acc:GSMUA_Achr6G08050_001]

Coordinates

chr6:-:5394289..5396833

Molecular Weight (calculated)

13698.8 Da

IEP (calculated)

6.810

GRAVY (calculated)

0.076

Length

127 amino acids

Sequence
(BLAST)

001: MLAQEEARRL GHNFVGTEQI LLGLIGEGTG IAAKVLKSMG INLKDARVEV EKIIGRGSGF VAVEIPFTPR AKRVLELSLE EARQLGHNYI GSEHLLLGLL
101: REGEGVAARV LESLGADPSN IRTQAIF

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.