Factsheet for PGSC0003DMT400054236

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT5G50920.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036961	Potato	plastid	96.48	94.92
Solyc03g118340.2.1	Tomato	nucleus	95.82	94.17
PGSC0003DMT400037527	Potato	cytosol	92.53	91.22
GSMUA_Achr6P08040_001	Banana	cytosol	64.4	90.99
CDX84888	Canola	cytosol	81.54	89.72
Os04t0397100-01	Rice	plastid	39.67	89.58
GSMUA_Achr6P08050_001	Banana	cytosol	12.31	88.19
CDY64710	Canola	cytosol	79.56	88.08
KRH59753	Soybean	endoplasmic reticulum	87.47	86.62
KRH54115	Soybean	plastid	87.69	86.55
KRH63851	Soybean	plastid	87.69	86.55
KRH41069	Soybean	mitochondrion, plastid	86.7	85.85
GSMUA_Achr3P18630_001	Banana	plastid	84.18	84.83
AT5G50920.1	Thale cress	plastid	86.15	84.39
Bra022751.1-P	Field mustard	plastid	85.93	84.18
TraesCS6A01G195200.1	Wheat	plastid	84.51	83.95
CDY45800	Canola	plastid	84.95	83.93
TraesCS6B01G233800.1	Wheat	plastid	84.4	83.84
TraesCS6D01G183600.2	Wheat	cytosol, plastid	84.4	83.84
GSMUA_Achr6P16470_001	Banana	plastid	80.66	83.79
Zm00001d025273_P019	Maize	plastid	84.73	83.71
Bra018030.1-P	Field mustard	mitochondrion	81.65	83.67
HORVU2Hr1G071080.3	Barley	plastid	84.18	83.53
Zm00001d003894_P004	Maize	plastid	84.51	83.5
EES12052	Sorghum	plastid	84.51	83.5
TraesCS2D01G285800.1	Wheat	plastid	84.07	83.42
TraesCS2B01G304200.1	Wheat	golgi	84.07	83.42
TraesCS2A01G287300.2	Wheat	plastid	81.65	83.02
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	89.45	82.98
Os12t0230100-01	Rice	plastid	83.08	82.26
KXG23307	Sorghum	plastid	83.19	82.19
Bra029922.1-P	Field mustard	mitochondrion	83.74	82.11
CDX68504	Canola	mitochondrion	83.74	82.11
CDX83052	Canola	mitochondrion	83.63	82.09
Zm00001d024009_P001	Maize	plastid	82.75	81.76
TraesCS5A01G118900.1	Wheat	unclear	82.53	81.63
CDY05878	Canola	mitochondrion	83.52	81.55
TraesCS5B01G112500.1	Wheat	plastid	82.42	81.52
TraesCS5D01G118700.1	Wheat	plastid	82.31	81.41
GSMUA_Achr8P09160_001	Banana	plastid	80.99	79.76
AT3G48870.3	Thale cress	cytosol, plastid	82.31	78.68
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	81.87	76.57
TraesCS4B01G082900.1	Wheat	mitochondrion	51.87	62.68
GSMUA_AchrUn_...	Banana	plastid	77.69	60.38
PGSC0003DMT400037525	Potato	plastid	16.7	59.84
PGSC0003DMT400036893	Potato	plastid	43.3	40.83
PGSC0003DMT400003652	Potato	cytosol, plastid	41.54	38.61
PGSC0003DMT400063352	Potato	nucleus	38.57	38.49

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	UniProt:M1BW04	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	EnsemblPlantsGene:PGSC0003DMG400021039
PGSC:PGSC0003DMG400021039	EnsemblPlants:PGSC0003DMT400054236	PRINTS:PR00300	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572
PANTHER:PTHR43572:SF8	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI000296D064
InterPro:UVR_dom	SEG:seg	:	:	:	:

Description

ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400021039]

Coordinates

chr11:+:12206895..12211499

Molecular Weight (calculated)

101113.0 Da

IEP (calculated)

6.492

GRAVY (calculated)

-0.338

Length

910 amino acids

Sequence
(BLAST)

001: MARALVQSTD ILSSVAVAGE RAGQFNGSRK NQRTVRMICD VKFPSLKLKS FVGLRGCNAL DTLLVKSGET LHSKVAAATF VRRSQGCRFV PKAMFERFTE
101: KAIKGIMLAQ DEARRLGHDF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSVFITVE IPFTPLAKRV LELSLEEARQ LGHNYIHSEH
201: LLLGLLRQGE GVAARVLENL GADPSESSDG ATVGGGTSGL KMPTLEEYGT NLTKLAEEGK LDPVVGRQAQ IERVTQILGR RTKNNPCLIG EPGVGKTAIA
301: EGLAQRIANG DVPETIEGKK VITLDMGLLV AGTKYRGEFE ERLKKLMEEI KQSDDIILFI DEVHTLIGAG AAEGAIDAAN ILKPALARRE LQCIGATTLD
401: EYRKHIEKDP ALERRFQPVK VPEPSVDETI QILKGLRERY EIHHKLRYTD EAIEAAAKLS HQYISDRFLP DKAIDLIDEA GSRVRLRHAQ LPEEARELEK
501: ELRQITKEKN ESVRGQDFEK AGELRDREMD LKAQISALIY KNKEKSKAES EAGDAAGPLV TEADIQHIVS SWTGIPVEKV STDESDRLLK MEETLHTRVI
601: GQDEAVKAIS RAIRRARVGL KNPNRPIASF IFSGPTGVGK SELAKSLATY YFGSEEAMIR LDMSEFMERH TVSKLIGSPP GYVGYTEGGQ LTEAVRRRPY
701: TVVLFDEIEK AHPDVFNMML QILEDGRLTD SKGRTVDFKN TLLIMTSNVG SSVIEKGGRR IGFDLDFDEK DSSYNRIKSL VTEELKQYFR PEFLNRLDEM
801: IVFRQLTKLE VKEIADIMLK EVFVRLKNKE IELQVTERFR DRVVDEGYNP SYGARPLRRA IMRLLEDSMA EKMLASEIKE GDSVIVDVDS DGNVTVLNGS
901: SGAPSDPQIY

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.