Factsheet for TraesCS2D01G285800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 18071923
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT5G50920.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT5G50920.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G304200.1	Wheat	golgi	99.89	99.89
TraesCS2A01G287300.2	Wheat	plastid	97.49	99.89
HORVU2Hr1G071080.3	Barley	plastid	99.45	99.45
GSMUA_Achr6P08050_001	Banana	cytosol	13.52	97.64
Os04t0397100-01	Rice	plastid	42.64	97.02
Zm00001d025273_P019	Maize	plastid	96.51	96.09
Zm00001d003894_P004	Maize	plastid	96.51	96.09
EES12052	Sorghum	plastid	96.07	95.66
TraesCS6D01G183600.2	Wheat	cytosol, plastid	94.22	94.32
GSMUA_Achr6P08040_001	Banana	cytosol	63.8	90.84
CDX84888	Canola	cytosol	81.35	90.21
CDY64710	Canola	cytosol	79.93	89.17
GSMUA_Achr3P18630_001	Banana	plastid	86.04	87.38
PGSC0003DMT400037527	Potato	cytosol	87.68	87.11
Solyc12g042060.1.1	Tomato	plastid	87.57	87.0
GSMUA_Achr6P16470_001	Banana	plastid	81.9	85.73
KRH54115	Soybean	plastid	86.04	85.57
KRH63851	Soybean	plastid	85.93	85.47
PGSC0003DMT400036961	Potato	plastid	86.04	85.3
Solyc03g118340.2.1	Tomato	nucleus	85.93	85.1
KRH59753	Soybean	endoplasmic reticulum	85.28	85.09
TraesCS5D01G118700.1	Wheat	plastid	85.06	84.78
KRH41069	Soybean	mitochondrion, plastid	84.51	84.33
Bra018030.1-P	Field mustard	mitochondrion	81.46	84.12
PGSC0003DMT400054236	Potato	plastid	83.42	84.07
AT5G50920.1	Thale cress	plastid	85.06	83.96
Bra022751.1-P	Field mustard	plastid	84.84	83.75
CDY45800	Canola	plastid	83.75	83.39
CDX68504	Canola	mitochondrion	83.64	82.65
Bra029922.1-P	Field mustard	mitochondrion	83.53	82.54
CDX83052	Canola	mitochondrion	83.42	82.52
CDY05878	Canola	mitochondrion	83.64	82.3
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	86.7	81.04
AT3G48870.3	Thale cress	cytosol, plastid	82.33	79.31
TraesCS4D01G081100.1	Wheat	plastid	73.83	72.02
GSMUA_AchrUn_...	Banana	plastid	79.28	62.08
VIT_16s0100g00180.t01	Wine grape	cytosol	4.36	58.82
VIT_07s0005g05810.t01	Wine grape	cytosol	4.36	58.82
PGSC0003DMT400037525	Potato	plastid	16.25	58.66
TraesCS2D01G136900.1	Wheat	cytosol	26.28	46.17
TraesCS3D01G090400.1	Wheat	mitochondrion	29.88	46.13
TraesCS4D01G047000.1	Wheat	cytosol	32.28	44.38
TraesCS7D01G045200.1	Wheat	extracellular, mitochondrion	25.41	44.3
TraesCS4D01G046000.1	Wheat	cytosol	31.84	44.04
TraesCS7D01G445400.1	Wheat	cytosol	27.26	44.01
TraesCS7D01G445500.1	Wheat	cytosol	17.23	44.01
TraesCS5D01G328100.1	Wheat	plastid	44.17	43.55
TraesCS5D01G429500.1	Wheat	cytosol	31.41	43.05
TraesCS7D01G045500.1	Wheat	endoplasmic reticulum	29.12	42.93
TraesCS7D01G045700.1	Wheat	endoplasmic reticulum	29.12	42.93
TraesCS2D01G289100.1	Wheat	plastid	44.27	42.92
TraesCS5D01G429400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	31.19	42.88
TraesCS5D01G254700.2	Wheat	mitochondrion	19.41	41.98
TraesCS5D01G074000.1	Wheat	mitochondrion	31.62	41.85
TraesCS5D01G429700.1	Wheat	endoplasmic reticulum, mitochondrion, plastid	30.97	41.28
TraesCS7D01G042800.1	Wheat	plastid	28.9	41.21
TraesCS5D01G429600.1	Wheat	mitochondrion	30.86	41.13
TraesCS7D01G045400.1	Wheat	cytosol	21.7	40.37
TraesCS7D01G042900.1	Wheat	cytosol	28.24	40.28
TraesCS6D01G135600.1	Wheat	golgi	43.4	40.16
TraesCS7D01G046200.1	Wheat	cytosol	22.46	39.46
TraesCS3D01G449000.1	Wheat	cytosol	11.78	38.85
TraesCS1D01G342100.1	Wheat	golgi	37.84	37.8
TraesCS3D01G273600.1	Wheat	cytosol	37.62	37.79

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	EnsemblPlantsGene:TraesCS2D01G285800	EnsemblPlants:TraesCS2D01G285800.1	InterPro:UVR_dom	TIGR:cd00009
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:363975853..363982320

Molecular Weight (calculated)

101528.0 Da

IEP (calculated)

6.193

GRAVY (calculated)

-0.329

Length

917 amino acids

Sequence
(BLAST)

001: MEGTLVQSAI APTAYRSSST RSRVRTRATM LRSTPTRTLT LGGFQGLRQT NFLDTRSVIK RDFGSIVASQ ISRPRGSGSR MVVRAMFERF TEKAIKVIML
101: AQEEARRLGH NFVGTEQILL GLIGEGTGIA AKVLKSMGIS LKDARVEVEK IIGRGSGFVA VEIPFTPRAK RVLELSLEEA RQLGHNYIGS EHLLLGLLRE
201: GEGVAARVLE SLGADPNNIR TQVIRMVGES TEAVGAGVGG GSSGQKMPTL EEYGTNLTKL AEEGKLDPVV GRQDQIERVT QILGRRTKNN PCLIGEPGVG
301: KTAIAEGLAQ RICNGDVPET IEGKKVITLD MGLLVAGTKY RGEFEERLKK LMEEIKQNDD IILFIDEVHT LIGAGAAEGA IDAANILKPA LARGELQCIG
401: ATTLDEYRKH IEKDPALERR FQPVKVPEPT VEESIQILRG LRERYELHHK LRYTDDALVA AAQLSYQYIS DRFLPDKAID LIDEAGSRVR LRHAQLPDEA
501: KELDKKLRQI TKDKNEAVRG QDFEKAGELR DEEMELKAQI TAIIDKSKEM VKAETESGEV GPLVTEADIQ HIVSSWTGIP VEKVSSDESD RLLKMEETLH
601: TRIIGQDEAV KAISRAIRRA RVGLKNPNRP IASFIFSGPT GVGKSELAKA LASYYFGSEE AMIRLDMSEF MERHTVSKLI GSPPGYVGYT EGGQLTEAVR
701: RRPYTVVLFD EIEKAHPDVF NMMLQILEDG RLTDSKGRTV DFKNTLLIMT SNVGSSVIEK GGRKIGFDLD SDEKDTSYNR IKSLVTEELK QYFRPEFLNR
801: LDEMIVFRQL TKLEVKEIAD IMLKEVFDRL KAKEIDLQVT EKFRDRVVDE GYNPSYGARP LRRAIMRLLE DSLAEKMLAG EVKEGDSAIV DVDSDGKVVV
901: LNSGGGIAEP LEPALSA

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.