Factsheet for VIT_07s0005g05810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g00180.t01	Wine grape	cytosol	100.0	100.0
GSMUA_Achr6P08040_001	Banana	cytosol	58.82	6.21
VIT_17s0000g07190.t01	Wine grape	nucleus	80.88	6.04
TraesCS4B01G082900.1	Wheat	mitochondrion	52.94	4.78
GSMUA_Achr6P16470_001	Banana	plastid	58.82	4.57
TraesCS2A01G287300.2	Wheat	plastid	58.82	4.47
GSMUA_Achr8P09160_001	Banana	plastid	60.29	4.44
GSMUA_Achr3P18630_001	Banana	plastid	58.82	4.43
VIT_14s0108g01500.t01	Wine grape	plastid	63.24	4.41
TraesCS6A01G195200.1	Wheat	plastid	58.82	4.37
TraesCS6B01G233800.1	Wheat	plastid	58.82	4.37
TraesCS6D01G183600.2	Wheat	cytosol, plastid	58.82	4.37
HORVU2Hr1G071080.3	Barley	plastid	58.82	4.36
TraesCS2B01G304200.1	Wheat	golgi	58.82	4.36
TraesCS2D01G285800.1	Wheat	plastid	58.82	4.36
Os12t0230100-01	Rice	plastid	58.82	4.35
TraesCS5A01G118900.1	Wheat	unclear	58.82	4.35
TraesCS5B01G112500.1	Wheat	plastid	58.82	4.35
TraesCS5D01G118700.1	Wheat	plastid	58.82	4.35
Zm00001d025273_P019	Maize	plastid	58.82	4.34
Zm00001d024009_P001	Maize	plastid	58.82	4.34
Zm00001d003894_P004	Maize	plastid	58.82	4.34
EES12052	Sorghum	plastid	58.82	4.34
KXG23307	Sorghum	plastid	58.82	4.34
VIT_04s0008g05870.t01	Wine grape	mitochondrion	60.29	4.26
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	58.82	4.11
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	58.82	4.08
VIT_14s0068g01220.t01	Wine grape	cytosol	33.82	4.07
VIT_19s0014g00020.t01	Wine grape	plastid	52.94	3.81
GSMUA_AchrUn_...	Banana	plastid	60.29	3.5
Os04t0397100-01	Rice	plastid	4.41	0.74
GSMUA_Achr6P08050_001	Banana	cytosol	0.0	0.0
PGSC0003DMT400037525	Potato	plastid	0.0	0.0

Protein Annotations

ArrayExpress:VIT_07s0005g05810	EMBL:FN596000	EMBL:FN596502	EnsemblPlants:VIT_07s0005g05810.t01	EnsemblPlantsGene:VIT_07s0005g05810	Gene3D:3.40.50.300
InterPro:P-loop_NTPase	PANTHER:PTHR11638	PANTHER:PTHR11638:SF146	ProteinID:CCB56487	ProteinID:CCB56487.1	ProteinID:CCB60253
ProteinID:CCB60253.1	SUPFAM:SSF52540	UniParc:UPI0002108002	UniProt:F6HP81	MapMan:35.1	:

Description

No Description!

Coordinates

chr7:-:10137550..10138109

Molecular Weight (calculated)

7371.1 Da

IEP (calculated)

10.016

GRAVY (calculated)

-0.126

Length

68 amino acids

Sequence
(BLAST)

1: MILPRETKND PVLIEEPGMG KTAVVERLAQ KIVRGGVPSN LAEVRPMALD MGALVAGAKY RGEVRSWP

Best Arabidopsis Sequence Match ( AT1G74310.2 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVSLFT

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.