Factsheet for VIT_04s0008g05870.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g01280.t01
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25140.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT2G25140.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g011380.2.1	Tomato	cytosol, plastid	18.4	86.34
KRH52355	Soybean	cytosol, mitochondrion	56.76	83.87
GSMUA_Achr9P22420_001	Banana	cytosol	76.92	83.81
KRH61688	Soybean	mitochondrion	82.12	81.11
Bra007816.1-P	Field mustard	mitochondrion	78.38	77.41
CDY56280	Canola	mitochondrion	78.27	77.31
CDX76768	Canola	mitochondrion	78.17	77.29
AT2G25140.1	Thale cress	mitochondrion	77.34	77.18
EES06386	Sorghum	mitochondrion	76.61	74.44
Os02t0181900-01	Rice	mitochondrion	74.95	73.35
HORVU6Hr1G028690.1	Barley	mitochondrion	74.74	73.07
TraesCS6A01G146400.1	Wheat	mitochondrion	74.84	72.65
TraesCS6B01G174500.1	Wheat	mitochondrion	74.84	72.65
TraesCS6D01G135600.1	Wheat	golgi	74.74	72.55
CDY64721	Canola	cytosol	17.98	70.9
CDY53470	Canola	mitochondrion	55.93	67.84
Bra032044.1-P	Field mustard	mitochondrion	55.93	67.76
CDY68892	Canola	mitochondrion, plastid	57.48	66.71
VIT_14s0108g01500.t01	Wine grape	plastid	67.46	66.5
VIT_07s0005g05810.t01	Wine grape	cytosol	4.26	60.29
VIT_16s0100g00180.t01	Wine grape	cytosol	4.26	60.29
VIT_14s0068g01220.t01	Wine grape	cytosol	30.87	52.57
VIT_17s0000g07190.t01	Wine grape	nucleus	44.28	46.76
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	40.96	40.16
VIT_19s0014g00020.t01	Wine grape	plastid	34.51	35.1
Zm00001d008786_P001	Maize	plastid	4.89	26.4

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100247399	wikigene:100247399	MapMan:26.4.2.4	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	ProteinID:CBI21081	ProteinID:CBI21081.3	InterPro:Chaperonin_ClpB	InterPro:ClpA/B
InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil
UniProt:D7SUY2	EMBL:FN595231	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0016485
GO:GO:0019538	GO:GO:0042026	InterPro:IPR036628	EntrezGene:LOC100247399	wikigene:LOC100247399	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	TIGR:TC67791	TIGRFAMs:TIGR03346	UniParc:UPI000198313E	ArrayExpress:VIT_04s0008g05870	EnsemblPlantsGene:VIT_04s0008g05870
EnsemblPlants:VIT_04s0008g05870.t01	unigene:Vvi.3357	RefSeq:XP_002282880	RefSeq:XP_002282880.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:5486284..5510521

Molecular Weight (calculated)

108106.0 Da

IEP (calculated)

7.412

GRAVY (calculated)

-0.354

Length

962 amino acids

Sequence
(BLAST)

001: MASRAFRLTR SLHRYRSVLG RACELSAPAA VGRSVCVPLI RVVGGGAENP VFVKSVNNLV GNGFGRRFYS SYDNANQINQ SEFTEMAWEG MVDAVDAARL
101: SKQQIVESEH LMKALLEQKD GLARRIFTKA GLDNTSVLQA TDDFIDQQPK VVGDTSGPIL GTNLRSLLEK ARRHKKEMGD NFLSVEHLLL GFLSDARFGR
201: QLFQNLQLSE KDLKDAVSAV RGNQRVTDQN PEGKYQALEK YGNDLTELAR RGKLDPVIGR DDEIRRCIQI LSRRTKNNPV IIGEPGVGKT AIAEGLAQRI
301: VRGDVPEPLM NRKLISLDMG SLLAGAKFRG DFEERLKAVL KEVTASNGQI ILFIDEIHTV VGAGAVSGAM DAGNLLKPML GRGELRCIGA TTLNEYRKYI
401: EKDPALERRF QQVFCGQPSV EDAISILRGL RERYELHHGV KISDSALVSA AVLADRYITE RFLPDKAIDL VDEAAAKLKI EITSKPTELD EIDRAVIKLE
501: MEKLSLKSDT DKASRERLSK LENDLLSLKQ KQKDLTDQWE QEKVLMTRIR SIKEEIDRVN LEMESAEREY NLNRAAELKY GTLISLQRQL EEAEKNLANY
601: RKSGKSLLRE EVTDLDIAEI VSKWTGIPLS NLQQSERDKL VLLEQVLHQR VVGQENAVKS VADAIRRSRA GLSDPIRPIA SFMFMGPTGV GKTELAKALA
701: GYLFNTENAL VRIDMTEYME KHAVSRLVGA PPGYVGYEEG GQLTEVVRRR PYSVVLFDEI EKAHHDVFNI LLQLLDDGRI TDSQGRTVSF TNCVVIMTSN
801: IGSHYILETL QSTDKKEAVY EIMKKQVVEL ARQTFRPEFM NRIDEYIVFQ PLDSKEISKI VEIQMNRLRE RLKQKKIDLH YTKEAVELLG TQGFDPNFGA
901: RPVKRVIQQM VENEIAMGIL RGDFKEDESI IIDADMSANI PPHKRLLIKK LESSSPMDAM VA

Best Arabidopsis Sequence Match ( AT2G25140.1 )
(BLAST)

001: MALRRLSKSV SSAIKAQYTL SRPSPLLRSR SLSSSPHYTS IGRPTNSFIG KINNSSITHA TTTHGQLFPL SSPRRFCTTT AQVNQNEFTE MAWEGLINAF
101: DAARESKQQI VESEHLMKAL LEQKDGMARK IFTKAGIDNS SVLQATDLFI SKQPTVSDAS GQRLGSSLSV ILENAKRHKK DMLDSYVSVE HFLLAYYSDT
201: RFGQEFFRDM KLDIQVLKDA IKDVRGDQRV TDRNPESKYQ ALEKYGNDLT EMARRGKLDP VIGRDDEIRR CIQILCRRTK NNPVIIGEPG VGKTAIAEGL
301: AQRIVRGDVP EPLMNRKLIS LDMGSLLAGA KFRGDFEERL KAVMKEVSAS NGQTILFIDE IHTVVGAGAM DGAMDASNLL KPMLGRGELR CIGATTLTEY
401: RKYIEKDPAL ERRFQQVLCV QPSVEDTISI LRGLRERYEL HHGVTISDSA LVSAAVLADR YITERFLPDK AIDLVDEAGA KLKMEITSKP TELDGIDRAV
501: IKLEMEKLSL KNDTDKASKE RLQKIENDLS TLKQKQKELN VQWEKEKSLM TKIRSFKEEI DRVNLEIESA EREYDLNRAA ELKYGTLLSL QRQLEEAEKN
601: LTNFRQFGQS LLREVVTDLD IAEIVSKWTG IPLSNLQQSE REKLVMLEEV LHHRVIGQDM AVKSVADAIR RSRAGLSDPN RPIASFMFMG PTGVGKTELA
701: KALAGYLFNT ENAIVRVDMS EYMEKHSVSR LVGAPPGYVG YEEGGQLTEV VRRRPYSVVL FDEIEKAHPD VFNILLQLLD DGRITDSQGR TVSFKNCVVI
801: MTSNIGSHHI LETLRNNEDS KEAVYEIMKR QVVELARQNF RPEFMNRIDE YIVFQPLDSN EISKIVELQM RRVKNSLEQK KIKLQYTKEA VDLLAQLGFD
901: PNYGARPVKR VIQQMVENEI AVGILKGDFA EEDTVLVDVD HLASDNKLVI KKLESNASAE EMAA

Arabidopsis Description

CLPB4Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.