CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64721	Canola	cytosol	29.43	100.0
CDY53470	Canola	mitochondrion	88.54	92.56
Solyc06g011380.2.1	Tomato	cytosol, plastid	17.13	69.27
KRH52355	Soybean	cytosol, mitochondrion	53.32	67.9
CDY56280	Canola	mitochondrion	73.22	62.32
CDX76768	Canola	mitochondrion	72.98	62.18
GSMUA_Achr9P22420_001	Banana	cytosol	64.05	60.14
CDX85552	Canola	cytosol	17.97	58.43
KRH61688	Soybean	mitochondrion	67.67	57.6
VIT_04s0008g05870.t01	Wine grape	mitochondrion	66.71	57.48
Os02t0181900-01	Rice	mitochondrion	65.26	55.04
EES06386	Sorghum	mitochondrion	65.38	54.75
HORVU6Hr1G028690.1	Barley	mitochondrion	64.9	54.67
TraesCS6D01G135600.1	Wheat	golgi	64.78	54.19
TraesCS6A01G146400.1	Wheat	mitochondrion	64.78	54.19
TraesCS6B01G174500.1	Wheat	mitochondrion	64.54	53.99
CDX90991	Canola	plastid	59.11	50.83
CDY26423	Canola	plastid	58.99	50.26
CDX69524	Canola	plastid	58.99	50.26
CDX85551	Canola	plastid	35.71	45.26
CDX68190	Canola	nucleus	44.03	44.79
CDX96531	Canola	cytosol	39.45	44.01
CDX73074	Canola	cytosol	39.45	44.01
CDX85823	Canola	nucleus	45.24	42.47
CDX84888	Canola	cytosol	40.89	40.99
CDY64710	Canola	cytosol	40.17	40.51
CDY45800	Canola	plastid	41.62	37.46
CDX83052	Canola	mitochondrion	41.62	37.22
CDX68504	Canola	mitochondrion	41.38	36.96
CDY05878	Canola	mitochondrion	41.5	36.91
CDY38846	Canola	plastid	36.19	32.22
CDX71686	Canola	plastid	36.19	32.19
CDY32646	Canola	plastid	36.19	32.12

Protein Annotations

Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	GO:A0A078JTX0	UniProt:A0A078JTX0	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlants:CDY68892	ProteinID:CDY68892	ProteinID:CDY68892.1	InterPro:ClpA/B	InterPro:Clp_ATPase_C
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00080972001
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	PANTHER:PTHR11638
PANTHER:PTHR11638:SF86	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	UniParc:UPI0004EF23F6	SEG:seg

Description

BnaC04g56310DBnaC04g56310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTX0]

Coordinates

chrLK038210:-:498..3889

Molecular Weight (calculated)

92637.8 Da

IEP (calculated)

8.412

GRAVY (calculated)

-0.390

Length

829 amino acids

Sequence
(BLAST)

001: MAYRRLSKSI SLAIKAHNAL SRRPSLLFRS RALSASAHHF SSSSFLLRPS SFIGAPNNGI TSATLAAPRS GQLLPLSLQL QLPSPRRFMS TDGDKDAHEK
101: YENALEKCGT DLTEMARQGK LPPLIGRDDE IKRCIQILGR MTKSNPLIIG EPGVGKTAIA EGLAQRIVRG EVPEHLLNRK VISLDMGSLA AGTTYQGEFE
201: AKLKALLKEI TASNGKTLLF IDEIHTLVGA GGSTGSMDAS KILKPMLARG ELRCIGATTL TEYRKYIEKD PALERRFQQV FCGQPSVEDT VSILRGLRQR
301: YEKHHGVKIS DCSLVSAAVL SDRYITERFL PDKAIDLVDE AAAKLKMETI SKPTELEEID KAVIKLEMEK LSLRKDSFKS SEAFFKKEKE MENDLTKLKD
401: KQKEITKKWE ELTTQWDEDK SLITKLRSLK EEIDVSAKRE NSLNRTAELK YGTLMSLQGQ IEEAEKNLTK SGPSELSQIK EGVTDRHIAE IISKWTGIPL
501: SNLQQSEKEK LLLLEDVLHK KVIGQGKAVE SIADAIRCSK AGLSDPNRPI ASFMFMGPTG VGKTELAKAL AGYLFNTDNA IVRIDMSEYM EKSNVSRLIG
601: ASPGFVGYEE GGQLTEAVRR RPYSVVLFDE IEKAHPDVFN ILLQLLDDGR VTDSQGRTVS FRNCFVIMTS NIGAQSILDT FRGNEDRKEA VYETMKQQVV
701: ELARKTFKPE FMNRIDEYIV FQPLDTKEIS KIVEIQMRRV KNRLEENKIK LEYTQEAVDH LAQLGFDPNN GARPVKRVIE KIVKKEIANK VLKGEFAADD
801: TILLDVDQTS NELVIKKLES DAPVEEMAA

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.