CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032044.1-P	Field mustard	mitochondrion	99.12	98.99
CDY64721	Canola	cytosol	30.01	97.54
CDY68892	Canola	mitochondrion, plastid	92.56	88.54
Solyc06g011380.2.1	Tomato	cytosol, plastid	18.41	71.22
KRH52355	Soybean	cytosol, mitochondrion	54.6	66.51
CDY56280	Canola	mitochondrion	74.78	60.88
CDX76768	Canola	mitochondrion	74.53	60.74
GSMUA_Achr9P22420_001	Banana	cytosol	65.95	59.23
CDX85552	Canola	cytosol	18.54	57.65
KRH61688	Soybean	mitochondrion	68.98	56.16
VIT_04s0008g05870.t01	Wine grape	mitochondrion	67.84	55.93
HORVU6Hr1G028690.1	Barley	mitochondrion	66.58	53.66
Os02t0181900-01	Rice	mitochondrion	66.46	53.61
EES06386	Sorghum	mitochondrion	66.83	53.54
TraesCS6D01G135600.1	Wheat	golgi	66.46	53.18
TraesCS6A01G146400.1	Wheat	mitochondrion	66.46	53.18
TraesCS6B01G174500.1	Wheat	mitochondrion	66.2	52.98
CDX90991	Canola	plastid	60.03	49.38
CDY26423	Canola	plastid	60.15	49.02
CDX69524	Canola	plastid	60.03	48.92
CDX96531	Canola	cytosol	41.99	44.82
CDX73074	Canola	cytosol	41.99	44.82
CDX68190	Canola	nucleus	45.4	44.17
CDX85551	Canola	plastid	35.81	43.43
CDX85823	Canola	nucleus	46.78	42.02
CDX84888	Canola	cytosol	42.24	40.51
CDY64710	Canola	cytosol	41.74	40.27
CDY45800	Canola	plastid	43.0	37.02
CDX83052	Canola	mitochondrion	42.88	36.68
CDX68504	Canola	mitochondrion	42.75	36.53
CDY05878	Canola	mitochondrion	42.88	36.48
CDY38846	Canola	plastid	37.83	32.22
CDX71686	Canola	plastid	37.83	32.19
CDY32646	Canola	plastid	37.83	32.12

Protein Annotations

Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	GO:A0A078IQX1	UniProt:A0A078IQX1	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlants:CDY53470	ProteinID:CDY53470	ProteinID:CDY53470.1	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:Clp_ATPase_C	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00010789001	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
UniParc:UPI0004EDACCB	SEG:seg	:	:	:	:

Description

BnaA04g28110DBnaA04g28110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQX1]

Coordinates

chrLK033206:+:52536..56015

Molecular Weight (calculated)

88505.9 Da

IEP (calculated)

8.406

GRAVY (calculated)

-0.363

Length

793 amino acids

Sequence
(BLAST)

001: MAYRRLSKSV SAAIKVHNAL SRPSLLLRSR ALSASAHIIS STSFLRQPSS FIGAPRNGIT SATQEAPRGQ LLPLSLQLPF LRRFMSTDGD VSALKQYGTD
101: LTEMARQGKL PPLIGRDDEI KRCIQILCRM TKSNPVIIGE PGVGKTAIAE GLAQRIVKGE VPEPLLNRKV ISLDMGSLVA GTSYRGEFEE KLKAVVKEIT
201: ASNGKTLLFI DEIHTLVGAA CEGDSMDASN LLKPMLARGE LRCIGATTLS EYRKYIEKDP ALERRFQQVF CGQPSVEDTV SILRGLRQRY EKHHGVKISD
301: GSLVSAAVLS DRYITERFLP DKAIDLVDEA AAKLKMETTS KPTELEEVDK AVIKLEMEKL SLRKDTFKSS EAFFKKEKEM ENDLTKLKDK QKELIKQWEE
401: DKSLITKLRS LREEIDVSSK REYSQNRTAE LKYGTLMSLQ SQLEEAEKNL TKSGGSELPL LKEGVTDRHI AEIISKWTED VLHKKVIGQG KAVESIADAI
501: RCSKAGLSDP NRPIASFMFM GPTGVGKTEL AKALAGYLFN TDNAIVRIDM SEYMEKSNVS RLIGASPGFV GYEEGGQLTE AVRRRPYSVV LFDEIEKAHP
601: DVFNILLQLL DDGRVTDSQG KTVSFRNCFV IMTSNIGAQS ILDTFRGNED RKEAVYETMK QQVVELARKT FKPEFMNRID EYIVFQPLDT KEISKIVEIQ
701: TKRVKNRLEE SKIKLEYTQE AVDHLAQLGF DPNNGARPVK RVIEKIVKKE IANKVLKGEF SADDTILLDV DQTSNELVIK KLGSDAPVEE MAA

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.