Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr2P09630_001 | |
| GSMUA_Achr9P09250_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G25140.1 | GSMUA_Achr10P... | AT3G27960.1 | 21798944 |
| AT2G25140.1 | GSMUA_Achr2P09630_001 | AT3G27960.1 | 21798944 |
| AT2G25140.1 | GSMUA_Achr9P09250_001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g011380.2.1 | Tomato | cytosol, plastid | 19.71 | 84.88 |
| KRH52355 | Soybean | cytosol, mitochondrion | 59.34 | 80.49 |
| VIT_04s0008g05870.t01 | Wine grape | mitochondrion | 83.81 | 76.92 |
| KRH61688 | Soybean | mitochondrion | 83.81 | 75.98 |
| CDX76768 | Canola | mitochondrion | 81.65 | 74.1 |
| EES06386 | Sorghum | mitochondrion | 83.01 | 74.04 |
| Bra007816.1-P | Field mustard | mitochondrion | 81.65 | 74.02 |
| CDY56280 | Canola | mitochondrion | 81.54 | 73.92 |
| Zm00001d015520_P001 | Maize | mitochondrion | 82.45 | 73.68 |
| Os02t0181900-01 | Rice | mitochondrion | 81.88 | 73.55 |
| HORVU6Hr1G028690.1 | Barley | mitochondrion | 80.97 | 72.66 |
| AT2G25140.1 | Thale cress | mitochondrion | 79.16 | 72.51 |
| TraesCS6D01G135600.1 | Wheat | golgi | 81.09 | 72.25 |
| TraesCS6B01G174500.1 | Wheat | mitochondrion | 80.97 | 72.15 |
| TraesCS6A01G146400.1 | Wheat | mitochondrion | 80.97 | 72.15 |
| CDY64721 | Canola | cytosol | 18.91 | 68.44 |
| CDY53470 | Canola | mitochondrion | 59.23 | 65.95 |
| Bra032044.1-P | Field mustard | mitochondrion | 59.23 | 65.87 |
| GSMUA_Achr6P16670_001 | Banana | plastid | 69.31 | 65.31 |
| CDY68892 | Canola | mitochondrion, plastid | 60.14 | 64.05 |
| GSMUA_Achr6P08040_001 | Banana | cytosol | 39.75 | 54.5 |
| GSMUA_Achr3P16240_001 | Banana | cytosol | 43.94 | 45.54 |
| GSMUA_Achr1P13710_001 | Banana | cytosol | 43.71 | 45.36 |
| GSMUA_Achr6P16470_001 | Banana | plastid | 41.68 | 42.01 |
| GSMUA_Achr3P18630_001 | Banana | plastid | 42.7 | 41.75 |
| GSMUA_Achr8P09160_001 | Banana | plastid | 42.13 | 40.26 |
| GSMUA_Achr6P23780_001 | Banana | cytosol | 37.49 | 39.17 |
| GSMUA_Achr10P... | Banana | plastid | 36.24 | 32.29 |
| GSMUA_AchrUn_... | Banana | plastid | 39.86 | 30.06 |
| GSMUA_Achr2P12140_001 | Banana | plastid | 4.64 | 17.9 |
| GSMUA_Achr6P08050_001 | Banana | cytosol | 2.38 | 16.54 |
Protein Annotations
| Gene3D:1.10.1780.10 | Gene3D:1.10.8.60 | MapMan:26.4.2.4 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_core |
| InterPro:Chaperonin_ClpB | InterPro:ClpA/B | InterPro:ClpA/B_CS1 | InterPro:ClpA/B_CS2 | InterPro:Clp_ATPase_C | InterPro:Clp_N |
| InterPro:Clp_N_dom_sf | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009408 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016485 |
| GO:GO:0019538 | GO:GO:0042026 | EnsemblPlantsGene:GSMUA_Achr9G22420_001 | EnsemblPlants:GSMUA_Achr9P22420_001 | EnsemblPlants:GSMUA_Achr9T22420_001 | InterPro:IPR036628 |
| UniProt:M0U2K1 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02861 | PFAM:PF07724 | PFAM:PF10431 |
| PRINTS:PR00300 | ScanProsite:PS00870 | ScanProsite:PS00871 | PANTHER:PTHR11638 | PANTHER:PTHR11638:SF86 | SMART:SM00382 |
| SMART:SM01086 | SUPFAM:SSF52540 | SUPFAM:SSF81923 | TIGRFAMs:TIGR03346 | UniParc:UPI000296472B | SEG:seg |
Description
Chaperone protein ClpB 2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22420_001]
Coordinates
chr9:-:27512519..27520523
Molecular Weight (calculated)
99496.8 Da
IEP (calculated)
5.980
GRAVY (calculated)
-0.375
Length
883 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWDGIIGAV DAARQYKQQV VETEHLMKAL LEQKDGLARR IFTKSGIDNS SVLRATEEFI SQQPKIVGDT SGPILGQNLI TLFDNAKKFK KEFGDEFLSV
101: EHLVLAFCAD KRFGQQLFKN LQLNETELRN AILGVRGNQR VTDQNPEGKY QALEKYGSDL TELARRGKLD PVIGRDDEIR RCIQILSRRT KNNPVIIGEP
201: GVGKTAIAEG LAQRIIRGDV PEPLLDRKLI SLDMGSLVAG AKFRGDFEER LKAVLKEVSA SNGQIILFID EIHTVVGAGA TGGAMDAGNL LKPMLGRGEL
301: RCIGATTLNE YRKYIEKDPA LERRFQQVYC GQPSVEDTIS ILRGLRERYE LHHGVKISDS SLIAAAVLSD RYITERFLPD KAIDLIDEAA AKLKMEITSK
401: PTELDEVDRA VLKLEMEKLS LKNDTDKASK ERLSKLEADL TSLKQKQKEL TEQWEQEKSL MTKIRSIKEE IDRVNLEMEA AEREYDLNRA AELKYGTLIS
501: LQRQLQEAEQ KLAEFRQSGK SMLREEVTDL DIAEIVSKWT GIPISNLQQS ERDKLVHLED VLHKRVVGQD IAVRSVADAI RRSRAGLSDP NRPIASFMFM
601: GPTGVGKTEL AKALAGYLFN TENALVRIDM SEYMEKHAVS RLVGAPPGYV GYEEGGQLTE VVRRRPYAVV LFDEIEKAHH DVFNILLQLL DDGRITDSQG
701: RTVSFTNTVV IMTSNIGSHF ILDTLQNTHD TKDAVYELMK KQVLELARQT FRPEFMNRID EYIVFQPLDT RQINRIVEMQ LGHLKYRLKQ KNIYLHYTPA
801: AVELLGNLGF DPNFGARPVK RVIQQMVENE IALGVLKGDF DEDDSIVVDV DADQSLKDHP PQKKLVIRKL ENLPLPDVLA AND
101: EHLVLAFCAD KRFGQQLFKN LQLNETELRN AILGVRGNQR VTDQNPEGKY QALEKYGSDL TELARRGKLD PVIGRDDEIR RCIQILSRRT KNNPVIIGEP
201: GVGKTAIAEG LAQRIIRGDV PEPLLDRKLI SLDMGSLVAG AKFRGDFEER LKAVLKEVSA SNGQIILFID EIHTVVGAGA TGGAMDAGNL LKPMLGRGEL
301: RCIGATTLNE YRKYIEKDPA LERRFQQVYC GQPSVEDTIS ILRGLRERYE LHHGVKISDS SLIAAAVLSD RYITERFLPD KAIDLIDEAA AKLKMEITSK
401: PTELDEVDRA VLKLEMEKLS LKNDTDKASK ERLSKLEADL TSLKQKQKEL TEQWEQEKSL MTKIRSIKEE IDRVNLEMEA AEREYDLNRA AELKYGTLIS
501: LQRQLQEAEQ KLAEFRQSGK SMLREEVTDL DIAEIVSKWT GIPISNLQQS ERDKLVHLED VLHKRVVGQD IAVRSVADAI RRSRAGLSDP NRPIASFMFM
601: GPTGVGKTEL AKALAGYLFN TENALVRIDM SEYMEKHAVS RLVGAPPGYV GYEEGGQLTE VVRRRPYAVV LFDEIEKAHH DVFNILLQLL DDGRITDSQG
701: RTVSFTNTVV IMTSNIGSHF ILDTLQNTHD TKDAVYELMK KQVLELARQT FRPEFMNRID EYIVFQPLDT RQINRIVEMQ LGHLKYRLKQ KNIYLHYTPA
801: AVELLGNLGF DPNFGARPVK RVIQQMVENE IALGVLKGDF DEDDSIVVDV DADQSLKDHP PQKKLVIRKL ENLPLPDVLA AND
001: MALRRLSKSV SSAIKAQYTL SRPSPLLRSR SLSSSPHYTS IGRPTNSFIG KINNSSITHA TTTHGQLFPL SSPRRFCTTT AQVNQNEFTE MAWEGLINAF
101: DAARESKQQI VESEHLMKAL LEQKDGMARK IFTKAGIDNS SVLQATDLFI SKQPTVSDAS GQRLGSSLSV ILENAKRHKK DMLDSYVSVE HFLLAYYSDT
201: RFGQEFFRDM KLDIQVLKDA IKDVRGDQRV TDRNPESKYQ ALEKYGNDLT EMARRGKLDP VIGRDDEIRR CIQILCRRTK NNPVIIGEPG VGKTAIAEGL
301: AQRIVRGDVP EPLMNRKLIS LDMGSLLAGA KFRGDFEERL KAVMKEVSAS NGQTILFIDE IHTVVGAGAM DGAMDASNLL KPMLGRGELR CIGATTLTEY
401: RKYIEKDPAL ERRFQQVLCV QPSVEDTISI LRGLRERYEL HHGVTISDSA LVSAAVLADR YITERFLPDK AIDLVDEAGA KLKMEITSKP TELDGIDRAV
501: IKLEMEKLSL KNDTDKASKE RLQKIENDLS TLKQKQKELN VQWEKEKSLM TKIRSFKEEI DRVNLEIESA EREYDLNRAA ELKYGTLLSL QRQLEEAEKN
601: LTNFRQFGQS LLREVVTDLD IAEIVSKWTG IPLSNLQQSE REKLVMLEEV LHHRVIGQDM AVKSVADAIR RSRAGLSDPN RPIASFMFMG PTGVGKTELA
701: KALAGYLFNT ENAIVRVDMS EYMEKHSVSR LVGAPPGYVG YEEGGQLTEV VRRRPYSVVL FDEIEKAHPD VFNILLQLLD DGRITDSQGR TVSFKNCVVI
801: MTSNIGSHHI LETLRNNEDS KEAVYEIMKR QVVELARQNF RPEFMNRIDE YIVFQPLDSN EISKIVELQM RRVKNSLEQK KIKLQYTKEA VDLLAQLGFD
901: PNYGARPVKR VIQQMVENEI AVGILKGDFA EEDTVLVDVD HLASDNKLVI KKLESNASAE EMAA
101: DAARESKQQI VESEHLMKAL LEQKDGMARK IFTKAGIDNS SVLQATDLFI SKQPTVSDAS GQRLGSSLSV ILENAKRHKK DMLDSYVSVE HFLLAYYSDT
201: RFGQEFFRDM KLDIQVLKDA IKDVRGDQRV TDRNPESKYQ ALEKYGNDLT EMARRGKLDP VIGRDDEIRR CIQILCRRTK NNPVIIGEPG VGKTAIAEGL
301: AQRIVRGDVP EPLMNRKLIS LDMGSLLAGA KFRGDFEERL KAVMKEVSAS NGQTILFIDE IHTVVGAGAM DGAMDASNLL KPMLGRGELR CIGATTLTEY
401: RKYIEKDPAL ERRFQQVLCV QPSVEDTISI LRGLRERYEL HHGVTISDSA LVSAAVLADR YITERFLPDK AIDLVDEAGA KLKMEITSKP TELDGIDRAV
501: IKLEMEKLSL KNDTDKASKE RLQKIENDLS TLKQKQKELN VQWEKEKSLM TKIRSFKEEI DRVNLEIESA EREYDLNRAA ELKYGTLLSL QRQLEEAEKN
601: LTNFRQFGQS LLREVVTDLD IAEIVSKWTG IPLSNLQQSE REKLVMLEEV LHHRVIGQDM AVKSVADAIR RSRAGLSDPN RPIASFMFMG PTGVGKTELA
701: KALAGYLFNT ENAIVRVDMS EYMEKHSVSR LVGAPPGYVG YEEGGQLTEV VRRRPYSVVL FDEIEKAHPD VFNILLQLLD DGRITDSQGR TVSFKNCVVI
801: MTSNIGSHHI LETLRNNEDS KEAVYEIMKR QVVELARQNF RPEFMNRIDE YIVFQPLDSN EISKIVELQM RRVKNSLEQK KIKLQYTKEA VDLLAQLGFD
901: PNYGARPVKR VIQQMVENEI AVGILKGDFA EEDTVLVDVD HLASDNKLVI KKLESNASAE EMAA
Arabidopsis Description
CLPB4Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.