Factsheet for GSMUA_Achr6P08040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0397100-01	Rice	plastid	51.55	82.38
CDX84888	Canola	cytosol	90.22	70.25
CDY64710	Canola	cytosol	87.89	68.86
GSMUA_Achr3P18630_001	Banana	plastid	94.72	67.55
GSMUA_Achr6P16470_001	Banana	plastid	91.61	67.35
KRH54115	Soybean	plastid	92.39	64.53
KRH63851	Soybean	plastid	92.24	64.43
PGSC0003DMT400054236	Potato	plastid	90.99	64.4
PGSC0003DMT400037527	Potato	cytosol	92.24	64.36
Solyc12g042060.1.1	Tomato	plastid	92.08	64.25
KRH59753	Soybean	endoplasmic reticulum	91.61	64.2
TraesCS6B01G233800.1	Wheat	plastid	91.3	64.19
TraesCS6A01G195200.1	Wheat	plastid	91.15	64.08
TraesCS6D01G183600.2	Wheat	cytosol, plastid	91.15	64.08
GSMUA_Achr8P09160_001	Banana	plastid	91.93	64.07
EES12052	Sorghum	plastid	91.61	64.06
Zm00001d003894_P004	Maize	plastid	91.61	64.06
Zm00001d025273_P019	Maize	plastid	91.46	63.95
TraesCS2B01G304200.1	Wheat	golgi	90.84	63.8
TraesCS2D01G285800.1	Wheat	plastid	90.84	63.8
HORVU2Hr1G071080.3	Barley	plastid	90.84	63.8
PGSC0003DMT400036961	Potato	plastid	91.46	63.68
Solyc03g118340.2.1	Tomato	nucleus	91.46	63.61
Os12t0230100-01	Rice	plastid	90.68	63.55
KRH41069	Soybean	mitochondrion, plastid	90.68	63.55
Zm00001d024009_P001	Maize	plastid	90.53	63.3
KXG23307	Sorghum	plastid	90.53	63.3
Bra018030.1-P	Field mustard	mitochondrion	86.96	63.06
TraesCS2A01G287300.2	Wheat	plastid	87.42	62.91
CDY45800	Canola	plastid	89.91	62.87
Bra022751.1-P	Field mustard	plastid	90.22	62.54
AT5G50920.1	Thale cress	plastid	90.22	62.54
TraesCS5D01G118700.1	Wheat	plastid	88.66	62.07
TraesCS5B01G112500.1	Wheat	plastid	88.66	62.07
TraesCS5A01G118900.1	Wheat	unclear	88.66	62.07
Bra029922.1-P	Field mustard	mitochondrion	88.2	61.21
CDX68504	Canola	mitochondrion	88.2	61.21
CDX83052	Canola	mitochondrion	88.04	61.16
CDY05878	Canola	mitochondrion	87.73	60.62
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	91.77	60.24
AT3G48870.3	Thale cress	cytosol, plastid	87.27	59.03
TraesCS4B01G082900.1	Wheat	mitochondrion	68.79	58.83
VIT_07s0005g05810.t01	Wine grape	cytosol	6.21	58.82
VIT_16s0100g00180.t01	Wine grape	cytosol	6.21	58.82
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	87.89	58.17
GSMUA_AchrUn_...	Banana	plastid	84.78	46.63
GSMUA_Achr9P22420_001	Banana	cytosol	54.5	39.75
GSMUA_Achr6P23780_001	Banana	cytosol	51.4	39.17
GSMUA_Achr6P16670_001	Banana	plastid	53.88	37.03
GSMUA_Achr3P16240_001	Banana	cytosol	46.27	34.98
GSMUA_Achr1P13710_001	Banana	cytosol	45.96	34.78
GSMUA_Achr10P...	Banana	plastid	51.09	33.2
GSMUA_Achr2P12140_001	Banana	plastid	6.06	17.03
PGSC0003DMT400037525	Potato	plastid	0.78	1.97
GSMUA_Achr6P08050_001	Banana	cytosol	0.31	1.57

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:ClpA/B
InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr6G08040_001	EnsemblPlants:GSMUA_Achr6P08040_001	EnsemblPlants:GSMUA_Achr6T08040_001
InterPro:IPR001943	UniProt:M0T553	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572
PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	UniParc:UPI000295EDC5	InterPro:UVR_dom
SEG:seg	:	:	:	:	:

Description

ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G08040_001]

Coordinates

chr6:-:5388726..5394286

Molecular Weight (calculated)

72673.6 Da

IEP (calculated)

5.388

GRAVY (calculated)

-0.401

Length

644 amino acids

Sequence
(BLAST)

001: MPTLEEYGTN LTKLAEEGKL DPVVGRQDQI ERVTQILGRR TKNNPCLIGE PGVGKTAIAE GLAQRIANGD VPETIEGKKV ITLDMGLLVA GTKYRGEFEE
101: RLKKLMEEIK QSDEIILFID EVHTLIGAGA AEGAIDAANI LKPALARGEL QCIGATTLDE YRKHIEKDPA LERRFQPVRV PEPTVDETIL ILRGLRERYE
201: IHHKLRYTDE ALIAAAQLSY QYISDRFLPD KAIDLIDEAG SRVRLRHAQL PEEARELDKE LRQITKEKNE AVRSQDFEKA GELRDREMEL KAQISALIDK
301: GKEMSQAESE AGDSGPTVTE ADIQHIVSSW TGIPVEKVSS DESDRLLKME ETLHKRVIGQ DEAVKAISRA IRRARVGLKN PNRPIASFIF SGPTGVGKSE
401: LAKALASYYF GSEEAMIRLD MSEFMERHTV SKLIGSPPGY VGYTEGGQLT EAVRRRPYTV VLFDEIEKAH PDVFNMMLQI LEDGRLTDSK GRTVDFKNTL
501: LIMTSNVGSS SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVFDRLKV KDIELQVTER FKDRVVDEGY NPSYGARPLR RAIMRLLEDS
601: LAEKMLAGEI KEGDSAICRA KEKNCCCSFK FIPCDLHLYF RVLT

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.