Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 1
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G50920.1 | HORVU4Hr1G019530.1 | AT4G09570.1 | 19130088 |
| AT5G50920.1 | HORVU5Hr1G032550.3 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G118900.1 | Wheat | unclear | 92.81 | 98.15 |
| TraesCS5D01G118700.1 | Wheat | plastid | 92.6 | 97.93 |
| TraesCS5B01G112500.1 | Wheat | plastid | 92.5 | 97.83 |
| GSMUA_Achr6P08050_001 | Banana | cytosol | 12.64 | 96.85 |
| Os12t0230100-01 | Rice | plastid | 88.49 | 93.69 |
| KXG23307 | Sorghum | plastid | 87.15 | 92.07 |
| Zm00001d024009_P001 | Maize | plastid | 86.95 | 91.86 |
| CDX84888 | Canola | cytosol | 76.05 | 89.48 |
| GSMUA_Achr6P08040_001 | Banana | cytosol | 58.17 | 87.89 |
| CDY64710 | Canola | cytosol | 73.69 | 87.23 |
| HORVU2Hr1G071080.3 | Barley | plastid | 80.06 | 84.95 |
| GSMUA_Achr3P18630_001 | Banana | plastid | 78.21 | 84.27 |
| PGSC0003DMT400037527 | Potato | cytosol | 79.55 | 83.86 |
| Solyc12g042060.1.1 | Tomato | plastid | 79.44 | 83.75 |
| KRH54115 | Soybean | plastid | 79.03 | 83.41 |
| KRH63851 | Soybean | plastid | 78.93 | 83.3 |
| PGSC0003DMT400036961 | Potato | plastid | 79.14 | 83.24 |
| Solyc03g118340.2.1 | Tomato | nucleus | 79.14 | 83.15 |
| KRH59753 | Soybean | endoplasmic reticulum | 78.52 | 83.13 |
| KRH41069 | Soybean | mitochondrion, plastid | 78.01 | 82.59 |
| GSMUA_Achr6P16470_001 | Banana | plastid | 74.31 | 82.53 |
| Bra022751.1-P | Field mustard | plastid | 78.62 | 82.35 |
| AT5G50920.1 | Thale cress | plastid | 78.52 | 82.24 |
| CDY45800 | Canola | plastid | 77.6 | 81.98 |
| PGSC0003DMT400054236 | Potato | plastid | 76.57 | 81.87 |
| Bra018030.1-P | Field mustard | mitochondrion | 74.41 | 81.53 |
| Bra029922.1-P | Field mustard | mitochondrion | 76.77 | 80.5 |
| CDX68504 | Canola | mitochondrion | 76.77 | 80.5 |
| CDX83052 | Canola | mitochondrion | 76.67 | 80.47 |
| CDY05878 | Canola | mitochondrion | 76.67 | 80.04 |
| VIT_17s0000g00340.t01 | Wine grape | mitochondrion, plastid | 80.37 | 79.71 |
| AT3G48870.3 | Thale cress | cytosol, plastid | 75.13 | 76.79 |
| HORVU4Hr1G014120.2 | Barley | plastid | 69.06 | 71.64 |
| GSMUA_AchrUn_... | Banana | plastid | 72.25 | 60.03 |
| PGSC0003DMT400037525 | Potato | plastid | 15.52 | 59.45 |
| VIT_16s0100g00180.t01 | Wine grape | cytosol | 4.11 | 58.82 |
| VIT_07s0005g05810.t01 | Wine grape | cytosol | 4.11 | 58.82 |
| HORVU5Hr1G123460.3 | Barley | mitochondrion | 24.77 | 50.52 |
| HORVU5Hr1G081860.1 | Barley | cytosol | 37.41 | 47.64 |
| HORVU5Hr1G102460.1 | Barley | cytosol | 7.5 | 47.4 |
| HORVU7Hr1G008950.1 | Barley | cytosol, plastid | 11.1 | 45.38 |
| HORVU7Hr1G008380.2 | Barley | cytosol | 13.46 | 44.86 |
| HORVU7Hr1G105430.1 | Barley | cytosol | 25.49 | 44.21 |
| HORVU2Hr1G072020.5 | Barley | plastid | 37.82 | 44.12 |
| HORVU5Hr1G102440.2 | Barley | mitochondrion, plastid | 29.8 | 43.41 |
| HORVU4Hr1G008860.1 | Barley | cytosol, peroxisome | 9.76 | 43.38 |
| HORVU7Hr1G105530.1 | Barley | cytosol | 28.98 | 42.92 |
| HORVU7Hr1G008940.2 | Barley | cytosol | 27.54 | 42.2 |
| HORVU1Hr1G068970.1 | Barley | cytosol | 29.91 | 40.36 |
| HORVU6Hr1G028690.1 | Barley | mitochondrion | 40.8 | 40.35 |
| HORVU7Hr1G105270.3 | Barley | cytosol | 29.5 | 40.2 |
| HORVU7Hr1G035110.4 | Barley | cytosol | 17.99 | 39.77 |
| HORVU6Hr1G063810.3 | Barley | plastid | 11.2 | 38.65 |
| HORVU7Hr1G009000.2 | Barley | cytosol | 13.77 | 38.07 |
| HORVU1Hr1G076190.4 | Barley | nucleus | 35.35 | 37.55 |
| HORVU3Hr1G071120.7 | Barley | cytosol | 35.25 | 37.53 |
| HORVU4Hr1G090440.2 | Barley | plastid | 39.16 | 36.01 |
| HORVU1Hr1G076100.1 | Barley | cytosol | 5.76 | 34.36 |
Protein Annotations
| Gene3D:1.10.1780.10 | Gene3D:1.10.8.60 | MapMan:19.4.2.9.4 | Gene3D:3.40.50.300 | UniProt:A0A287QST5 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_core | InterPro:ClpA/B | InterPro:ClpA/B_CS1 | InterPro:ClpA/B_CS2 | InterPro:Clp_ATPase_C | InterPro:Clp_N |
| InterPro:Clp_N_dom_sf | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0019538 | EnsemblPlantsGene:HORVU5Hr1G031470 | EnsemblPlants:HORVU5Hr1G031470.6 |
| InterPro:IPR001943 | InterPro:IPR036628 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02151 | PFAM:PF02861 |
| PFAM:PF07724 | PFAM:PF10431 | PRINTS:PR00300 | ScanProsite:PS00870 | ScanProsite:PS00871 | PFscan:PS50151 |
| PANTHER:PTHR43572 | PANTHER:PTHR43572:SF19 | SMART:SM00382 | SMART:SM01086 | SUPFAM:SSF52540 | SUPFAM:SSF81923 |
| UniParc:UPI000B484CBF | InterPro:UVR_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:199500677..199523036
Molecular Weight (calculated)
108009.0 Da
IEP (calculated)
8.011
GRAVY (calculated)
-0.300
Length
973 amino acids
Sequence
(BLAST)
(BLAST)
001: ERAILFLVAC WASPTKRLFF SSPFLSPWRR NKQGRALLSP SLGLSSQVWD NLLLTMAGTL VLPVALETTF AGRTGGRHWK SHGTRRTPSM LAMSLNRPVR
101: MAAFVGLRSV HSFSAMCSSN FRSTVASYRF SRRGRRASFV TRAMFERFTE KAIKVIMLAQ EEARRLGHNF VGTEQVLLGL VGEGTGIAAK VLKSMGINLK
201: DARVEVEKII GRGNGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLESL GADPSNIRTQ VVRMIGETTE AVGAGVGGGS
301: SGNKMPTLEE YGTNLTKLAE EGKLDPVVGR EPQIERVVQI LGRRTKNNPC LIGEPGVGKT AIAEGLAQRI SNGDVPETIE GKKVITLDMG LLVAGTKYRG
401: EFEERLKKLM EEIKQSDEII LFIDEVHTLI GAGAAEGAID AANILKPALA RGELQCIGAT TLDEYRKHVE KDPALERRFQ PVKVPEPTVD ETIEILRGLR
501: ERYEIHHKLR YTDDSLIAAA KLSYQYISDR FLPDKAIDLI DEAGSRVRLR HAQVPEEARE LDKELKQITK DKNEAVRGQD FEKAGELRDR EMELKAQITT
601: LIDKSKEMTK AETESGETGP MVNESDIQHI VSSWTGIPVE KVSTDESDKL LKMEETLHKR VIGQDEAVKA ISRSVRRARV GLKSPNRPIA SFIFAGPTGV
701: GKSELAKTLA SYYFGSEEAM IRLDMSEFME RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYSVVLFDEI ENPPPFNMML QILEDGRLTD SKGRTVDFKN
801: TLLIMTSNVG SSVIEKGGRK IGFDLDSDEK DSSYGRIKSL VVEEMKQYFR PEFLNRLDEM IVFRQLTKLE VKEIANIMLQ EVFTRLKSKD INLQVTEKFK
901: ERVVDEGYNP SYGARPLRRA IMRLLEDSLA EKILGGEVKE GDSVIVDVDS EGKVIVLNGE SGLPELPTPA VAV
101: MAAFVGLRSV HSFSAMCSSN FRSTVASYRF SRRGRRASFV TRAMFERFTE KAIKVIMLAQ EEARRLGHNF VGTEQVLLGL VGEGTGIAAK VLKSMGINLK
201: DARVEVEKII GRGNGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLESL GADPSNIRTQ VVRMIGETTE AVGAGVGGGS
301: SGNKMPTLEE YGTNLTKLAE EGKLDPVVGR EPQIERVVQI LGRRTKNNPC LIGEPGVGKT AIAEGLAQRI SNGDVPETIE GKKVITLDMG LLVAGTKYRG
401: EFEERLKKLM EEIKQSDEII LFIDEVHTLI GAGAAEGAID AANILKPALA RGELQCIGAT TLDEYRKHVE KDPALERRFQ PVKVPEPTVD ETIEILRGLR
501: ERYEIHHKLR YTDDSLIAAA KLSYQYISDR FLPDKAIDLI DEAGSRVRLR HAQVPEEARE LDKELKQITK DKNEAVRGQD FEKAGELRDR EMELKAQITT
601: LIDKSKEMTK AETESGETGP MVNESDIQHI VSSWTGIPVE KVSTDESDKL LKMEETLHKR VIGQDEAVKA ISRSVRRARV GLKSPNRPIA SFIFAGPTGV
701: GKSELAKTLA SYYFGSEEAM IRLDMSEFME RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYSVVLFDEI ENPPPFNMML QILEDGRLTD SKGRTVDFKN
801: TLLIMTSNVG SSVIEKGGRK IGFDLDSDEK DSSYGRIKSL VVEEMKQYFR PEFLNRLDEM IVFRQLTKLE VKEIANIMLQ EVFTRLKSKD INLQVTEKFK
901: ERVVDEGYNP SYGARPLRRA IMRLLEDSLA EKILGGEVKE GDSVIVDVDS EGKVIVLNGE SGLPELPTPA VAV
001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL
Arabidopsis Description
CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.