Factsheet for VIT_17s0000g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 3
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	12.74	98.43
CDX84888	Canola	cytosol	78.59	93.23
GSMUA_Achr6P08040_001	Banana	cytosol	60.24	91.77
Solyc12g042060.1.1	Tomato	plastid	86.24	91.66
PGSC0003DMT400037527	Potato	cytosol	86.14	91.55
KRH54115	Soybean	plastid	85.83	91.32
KRH63851	Soybean	plastid	85.63	91.11
CDY64710	Canola	cytosol	76.25	91.0
Solyc03g118340.2.1	Tomato	nucleus	85.73	90.82
Os04t0397100-01	Rice	plastid	37.31	90.82
PGSC0003DMT400036961	Potato	plastid	85.63	90.81
KRH59753	Soybean	endoplasmic reticulum	84.4	90.1
PGSC0003DMT400054236	Potato	plastid	82.98	89.45
GSMUA_Achr3P18630_001	Banana	plastid	81.65	88.7
KRH41069	Soybean	mitochondrion, plastid	83.08	88.68
AT5G50920.1	Thale cress	plastid	83.08	87.73
EES12052	Sorghum	plastid	82.26	87.62
Bra022751.1-P	Field mustard	plastid	82.87	87.51
Zm00001d025273_P019	Maize	plastid	82.06	87.41
Zm00001d003894_P004	Maize	plastid	81.96	87.3
CDY45800	Canola	plastid	81.86	87.19
HORVU2Hr1G071080.3	Barley	plastid	81.14	86.8
TraesCS6A01G195200.1	Wheat	plastid	81.04	86.79
TraesCS2D01G285800.1	Wheat	plastid	81.04	86.7
TraesCS2B01G304200.1	Wheat	golgi	81.04	86.7
TraesCS6D01G183600.2	Wheat	cytosol, plastid	80.94	86.68
Bra018030.1-P	Field mustard	mitochondrion	78.39	86.6
TraesCS6B01G233800.1	Wheat	plastid	80.84	86.57
GSMUA_Achr6P16470_001	Banana	plastid	77.27	86.53
TraesCS2A01G287300.2	Wheat	plastid	78.8	86.37
Os12t0230100-01	Rice	plastid	80.43	85.85
CDX68504	Canola	mitochondrion	80.94	85.56
Bra029922.1-P	Field mustard	mitochondrion	80.84	85.45
CDX83052	Canola	mitochondrion	80.63	85.33
KXG23307	Sorghum	plastid	80.02	85.23
Zm00001d024009_P001	Maize	plastid	80.02	85.23
CDY05878	Canola	mitochondrion	80.73	84.98
TraesCS5A01G118900.1	Wheat	unclear	79.31	84.57
TraesCS5B01G112500.1	Wheat	plastid	79.31	84.57
TraesCS5D01G118700.1	Wheat	plastid	79.2	84.46
GSMUA_Achr8P09160_001	Banana	plastid	79.31	84.2
AT3G48870.3	Thale cress	cytosol, plastid	79.92	82.35
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	79.71	80.37
TraesCS4B01G082900.1	Wheat	mitochondrion	49.24	64.14
GSMUA_AchrUn_...	Banana	plastid	76.45	64.05
VIT_14s0068g01220.t01	Wine grape	cytosol	36.19	62.83
VIT_07s0005g05810.t01	Wine grape	cytosol	4.08	58.82
VIT_16s0100g00180.t01	Wine grape	cytosol	4.08	58.82
VIT_19s0014g00020.t01	Wine grape	plastid	39.86	41.33
VIT_04s0008g05870.t01	Wine grape	mitochondrion	40.16	40.96
VIT_17s0000g07190.t01	Wine grape	nucleus	37.1	39.96
VIT_14s0108g01500.t01	Wine grape	plastid	39.65	39.86

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100250896	wikigene:100250896	MapMan:19.4.2.9.4	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	EMBL:AM453122	InterPro:ATPase_AAA_core	ProteinID:CAN78847	ProteinID:CAN78847.1	ProteinID:CCB43361
ProteinID:CCB43361.1	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N
InterPro:Clp_N_dom_sf	ncoils:Coil	UniProt:F6GT40	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004176	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006508
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009532
GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009706
GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0010380	GO:GO:0016020
GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0030312	GO:GO:0045036	GO:GO:0045037
InterPro:IPR001943	InterPro:IPR036628	EntrezGene:LOC100250896	wikigene:LOC100250896	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	TIGR:TC58736	TIGR:TC59159	TIGR:TC60280	UniParc:UPI000210A2EC
InterPro:UVR_dom	ArrayExpress:VIT_17s0000g00340	EnsemblPlantsGene:VIT_17s0000g00340	EnsemblPlants:VIT_17s0000g00340.t01	unigene:Vvi.11337	unigene:Vvi.2248
RefSeq:XP_002284518	RefSeq:XP_002284518.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:+:238286..249241

Molecular Weight (calculated)

108962.0 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.291

Length

981 amino acids

Sequence
(BLAST)

001: MGVKQLTPLL SFMNGKGAQI VMSIQYYNPY CFPFSLFFRF FLSPNKDLEV CCFSVSAVMA RALVQSTNIF ASVADGKHGK FQGSERTKKS VKMMCNVQAP
101: GLRIRGFSGL RGANALDNLV RSGHDFHSRV AAAISVRGGK ASRCVARAMF ERFTEKAIKV IMLAQEEARR LGHNFVGTEQ ILLGLIGEGT GIAAKVLKSM
201: GINLKDARVE VEKIIGRGSG FVAVEIPFTP RAKRVLELSL EEARQLGHNY IGSEHLLLGL LREGEGVAAR VLENLGADPS NIRTQVIRMV GESTEAVGAG
301: VGGGTTGNKM PTLEEYGTNL TKLAEEGKLD PVVGRQQQIE RVTQILGRRT KNNPCLIGEP GVGKTAIAEG LAQRIANGDV PETIEGKKVI TLDMGLLVAG
401: TKYRGEFEER LKKLMEEIKQ SDEIILFIDE VHTLIGAGAA EGAIDAANIL KPALARGELQ CIGATTLDEY RKHIEKDPAL ERRFQPVKVP EPSVDETIQI
501: LKGLRERYEI HHKLRYTDEA LVSAARLSYQ YISDRFLPDK AIDLIDEAGS RVRLRHAQLP EEARELEKEL RQITKEKNEA VRSQDFEKAG ELRDREMDLK
601: AQISTLIDKG KEMTKAETEA GDIGPMVTEV DIQHIVSAWT GIPVEKVSTD ESDRLLKMEE TLHRRVIGQD EAVKAISRAI RRARVGLKNP NRPIASFIFS
701: GPTGVGKSEL AKALAAYYFG SEEAMIRLDM SEFMERHTVS KLIGSPPGYV GYTEGGQLTE AVRRRPYTVV LFDEIEKAHP DVFNMMLQIL EDGRLTDSKG
801: RTVDFKNTLL IMTSNVGSSV IEKGGRRIGF DLDYDEKDSS YNRIKSLVTE ELKQYFRPEF LNRLDEMIVF RQLTKLEVKD IADIMLKEVF ERLKAKDIEL
901: QVTERFRDRV VDEGYNPSYG ARPLRRAIMR LLEDSMAEKM LAREIKEGDS VIVDVDSDGN VTVLNGSSGA PPESLPEAMP V

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.