CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	EES09373	AT4G09570.1	19130088
AT5G50920.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003894_P004	Maize	plastid	99.13	99.13
GSMUA_Achr6P08050_001	Banana	cytosol	13.57	98.43
Os04t0397100-01	Rice	plastid	43.0	98.26
TraesCS2D01G285800.1	Wheat	plastid	95.66	96.07
TraesCS2B01G304200.1	Wheat	golgi	95.55	95.97
HORVU2Hr1G071080.3	Barley	plastid	95.55	95.97
TraesCS2A01G287300.2	Wheat	plastid	93.16	95.87
GSMUA_Achr6P08040_001	Banana	cytosol	64.06	91.61
CDX84888	Canola	cytosol	81.43	90.69
CDY64710	Canola	cytosol	79.7	89.29
GSMUA_Achr3P18630_001	Banana	plastid	86.43	88.15
PGSC0003DMT400037527	Potato	cytosol	87.84	87.65
Solyc12g042060.1.1	Tomato	plastid	87.84	87.65
KXG23307	Sorghum	plastid	87.3	87.3
KRH54115	Soybean	plastid	86.75	86.66
KRH63851	Soybean	plastid	86.64	86.55
GSMUA_Achr6P16470_001	Banana	plastid	81.98	86.19
KRH59753	Soybean	endoplasmic reticulum	85.78	85.96
PGSC0003DMT400036961	Potato	plastid	86.1	85.73
Solyc03g118340.2.1	Tomato	nucleus	85.99	85.53
KRH41069	Soybean	mitochondrion, plastid	84.8	84.98
AT5G50920.1	Thale cress	plastid	85.34	84.61
PGSC0003DMT400054236	Potato	plastid	83.5	84.51
Bra022751.1-P	Field mustard	plastid	85.02	84.28
Bra018030.1-P	Field mustard	mitochondrion	81.22	84.23
CDY45800	Canola	plastid	83.82	83.82
CDX68504	Canola	mitochondrion	83.17	82.54
Bra029922.1-P	Field mustard	mitochondrion	83.06	82.44
CDY05878	Canola	mitochondrion	83.39	82.4
CDX83052	Canola	mitochondrion	82.84	82.31
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	87.62	82.26
AT3G48870.3	Thale cress	cytosol, plastid	81.87	79.2
TraesCS4B01G082900.1	Wheat	mitochondrion	52.77	64.54
GSMUA_AchrUn_...	Banana	plastid	80.02	62.94
EES13207	Sorghum	cytosol	28.12	61.81
PGSC0003DMT400037525	Potato	plastid	16.4	59.45
VIT_07s0005g05810.t01	Wine grape	cytosol	4.34	58.82
VIT_16s0100g00180.t01	Wine grape	cytosol	4.34	58.82
OQU79828	Sorghum	plastid	47.45	56.46
OQU81478	Sorghum	cytosol	42.24	45.71
EES05165	Sorghum	plastid	44.52	42.84
OQU85081	Sorghum	mitochondrion, plastid	32.79	42.06
OQU81585	Sorghum	cytosol	28.23	40.25
EES06386	Sorghum	mitochondrion	43.21	40.2
EER94678	Sorghum	plastid	42.45	39.78
EES19828	Sorghum	nucleus	38.0	38.34
EES01468	Sorghum	nucleus	37.68	37.92

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	EntrezGene:8072025	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	UniProt:C5YF84	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	EnsemblPlants:EES12052	ProteinID:EES12052	ProteinID:EES12052.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086
EnsemblPlantsGene:SORBI_3006G058100	SUPFAM:SSF52540	SUPFAM:SSF81923	unigene:Sbi.3522	UniParc:UPI0001A872CD	InterPro:UVR_dom
RefSeq:XP_002447724.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:40432572..40439841

Molecular Weight (calculated)

102145.0 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.318

Length

921 amino acids

Sequence
(BLAST)

001: MEGALVQSAI VPTVYRSSSG RFRARARART NATMVRNMPA RTLTLGGFQG LRQTNFLDTR SVIKRDFVSI VASQIARPRG SASRGVVRAM FERFTEKAIK
101: VIMLAQEEAR RLGHNFVGTE QILLGLIGEG TGIAAKVLKS MGINLKDARV EVEKIIGRGS GFVAVEIPFT PRAKRVLELS LEEARQLGHN YIGSEHLLLG
201: LLREGEGVAA RVLESLGADP NNIRTQVIRM VGESTEAVGA GVGGGSSGQK MPTLEEYGTN LTKLAEEGKL DPVVGRRDQI ERVTQILGRR TKNNPCLIGE
301: PGVGKTAIAE GLAQRIANGD VPETIEGKKV ITLDMGLLVA GTKYRGEFEE RLKKLMEEIK QNEDIILFID EVHTLIGAGA AEGAIDAANI LKPALARGEL
401: QCIGATTLDE YRKHIEKDPA LERRFQPVKV PEPTVDETIQ ILRGLRERYE LHHKLRYTDD ALIAAAQLSY QYISDRFLPD KAIDLIDEAG SRVRLRHAQL
501: PDEAKELDKE LRQITKQKNE AVRSQDFEKA GELRDREMEL KAQITAIIDK SKEMIKAETE SGEVGPLVTE ADIQHIVSSW TGIPVEKVSS DESDRLLKME
601: ETLHTRIIGQ DEAVKAISRA IRRARVGLKN PNRPIASFIF SGPTGVGKSE LAKALAAYYF GSEEAMIRLD MSEFMERHTV SKLIGSPPGY VGYTEGGQLT
701: EAVRRRPYTV VLFDEIEKAH PDVFNMMLQI LEDGRLTDSK GRTVDFKNTL LIMTSNVGSS VIEKGGRKIG FDLDYDEKDT SYNRIKSLVT EELKQYFRPE
801: FLNRLDEMIV FRQLTKLEVK EIADIMLKEV FDRLKAKDIN LQVTEKFRDR VVDEGYNPSY GARPLRRAIM RLLEDSLAEK MLAGEVKEGD SAIVDVDSDG
901: KVIVLNGGSG VAEPLEPALS T

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.