Factsheet for PGSC0003DMT400037525

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	46.85	93.7
PGSC0003DMT400037527	Potato	cytosol	70.47	19.39
PGSC0003DMT400036961	Potato	plastid	66.14	18.16
GSMUA_Achr6P16470_001	Banana	plastid	60.63	17.58
GSMUA_Achr3P18630_001	Banana	plastid	61.02	17.16
GSMUA_Achr8P09160_001	Banana	plastid	61.81	16.99
PGSC0003DMT400054236	Potato	plastid	59.84	16.7
Os12t0230100-01	Rice	plastid	60.24	16.65
TraesCS2A01G287300.2	Wheat	plastid	58.66	16.65
KXG23307	Sorghum	plastid	60.24	16.61
Zm00001d024009_P001	Maize	plastid	59.84	16.5
TraesCS5A01G118900.1	Wheat	unclear	59.45	16.41
EES12052	Sorghum	plastid	59.45	16.4
TraesCS5D01G118700.1	Wheat	plastid	59.06	16.3
TraesCS5B01G112500.1	Wheat	plastid	59.06	16.3
Zm00001d025273_P019	Maize	plastid	59.06	16.29
Zm00001d003894_P004	Maize	plastid	59.06	16.29
TraesCS2D01G285800.1	Wheat	plastid	58.66	16.25
HORVU2Hr1G071080.3	Barley	plastid	58.66	16.25
TraesCS2B01G304200.1	Wheat	golgi	58.66	16.25
TraesCS6A01G195200.1	Wheat	plastid	57.87	16.05
TraesCS6B01G233800.1	Wheat	plastid	57.48	15.94
TraesCS6D01G183600.2	Wheat	cytosol, plastid	57.48	15.94
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	59.45	15.52
GSMUA_AchrUn_...	Banana	plastid	62.6	13.58
PGSC0003DMT400036893	Potato	plastid	24.02	6.32
TraesCS4B01G082900.1	Wheat	mitochondrion	11.02	3.72
PGSC0003DMT400003652	Potato	cytosol, plastid	13.39	3.47
PGSC0003DMT400063352	Potato	nucleus	11.81	3.29
GSMUA_Achr6P08040_001	Banana	cytosol	1.97	0.78
VIT_07s0005g05810.t01	Wine grape	cytosol	0.0	0.0
VIT_16s0100g00180.t01	Wine grape	cytosol	0.0	0.0
Os04t0397100-01	Rice	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400037525	EnsemblPlantsGene:PGSC0003DMG401014476	Gene3D:1.10.1780.10	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538
InterPro:Clp_N	InterPro:Clp_N_dom_sf	InterPro:IPR036628	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	PFAM:PF02861
PGSC:PGSC0003DMG401014476	SEG:seg	SUPFAM:SSF81923	UniParc:UPI0002969A53	UniProt:M1B5I0	MapMan:35.1

Description

ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG401014476]

Coordinates

chr12:+:48733954..48734961

Molecular Weight (calculated)

27370.5 Da

IEP (calculated)

10.510

GRAVY (calculated)

0.002

Length

254 amino acids

Sequence
(BLAST)

001: MARALVQSTS IPSSVAGERT TKFNGSGKTK RAVTMLCNAQ SSSLTLRDFT GLRGCNAIDT LVRSGQTLQS KVAAATYVRR PRGCRFVPKA MFERFTEKAI
101: KVIMLAQEEA RRLGHNFVGT EQILLGLIGE GTGIAAKVLK SMGINLKDAR VEVEKIIGRG SGFVAVEIPF TPRAKRVLEL SLEEARQLGH NYIGSEHLLL
201: GLLREGEGVA ARVLENLGAD PSNIRTQASS RSHMLPLGSL ILCFCGKLDC LASS

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.