Factsheet for Zm00001d024009_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT5G50920.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT5G50920.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	13.57	98.43
KXG23307	Sorghum	plastid	98.26	98.26
Os12t0230100-01	Rice	plastid	95.11	95.32
TraesCS5A01G118900.1	Wheat	unclear	92.29	92.39
TraesCS5D01G118700.1	Wheat	plastid	92.18	92.28
TraesCS5B01G112500.1	Wheat	plastid	91.97	92.07
CDX84888	Canola	cytosol	81.54	90.81
GSMUA_Achr6P08040_001	Banana	cytosol	63.3	90.53
CDY64710	Canola	cytosol	79.48	89.05
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	91.86	86.95
Zm00001d003894_P004	Maize	plastid	86.64	86.64
Zm00001d025273_P019	Maize	plastid	86.32	86.32
GSMUA_Achr3P18630_001	Banana	plastid	84.47	86.16
Solyc12g042060.1.1	Tomato	plastid	85.67	85.48
PGSC0003DMT400037527	Potato	cytosol	85.67	85.48
KRH54115	Soybean	plastid	85.23	85.14
KRH63851	Soybean	plastid	84.91	84.82
KRH59753	Soybean	endoplasmic reticulum	84.58	84.77
GSMUA_Achr6P16470_001	Banana	plastid	80.46	84.59
Solyc03g118340.2.1	Tomato	nucleus	84.69	84.23
KRH41069	Soybean	mitochondrion, plastid	84.04	84.22
PGSC0003DMT400036961	Potato	plastid	84.47	84.11
Bra018030.1-P	Field mustard	mitochondrion	80.56	83.56
AT5G50920.1	Thale cress	plastid	84.15	83.42
Bra022751.1-P	Field mustard	plastid	84.15	83.42
CDY45800	Canola	plastid	83.06	83.06
CDX68504	Canola	mitochondrion	83.39	82.76
PGSC0003DMT400054236	Potato	plastid	81.76	82.75
Bra029922.1-P	Field mustard	mitochondrion	83.17	82.54
CDX83052	Canola	mitochondrion	83.06	82.52
CDY05878	Canola	mitochondrion	83.06	82.08
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	85.23	80.02
AT3G48870.3	Thale cress	cytosol, plastid	81.54	78.89
GSMUA_AchrUn_...	Banana	plastid	78.5	61.74
Zm00001d029672_P004	Maize	plastid	15.42	60.68
PGSC0003DMT400037525	Potato	plastid	16.5	59.84
VIT_16s0100g00180.t01	Wine grape	cytosol	4.34	58.82
VIT_07s0005g05810.t01	Wine grape	cytosol	4.34	58.82
Zm00001d039640_P001	Maize	cytoskeleton, cytosol, nucleus	8.36	51.33
Zm00001d036813_P001	Maize	cytosol	6.08	49.56
Zm00001d003847_P001	Maize	plastid	44.73	44.21
Zm00001d016664_P001	Maize	plastid	43.65	42.45
Zm00001d015520_P001	Maize	mitochondrion	43.32	40.38
Zm00001d047302_P002	Maize	plastid	42.45	40.14
Zm00001d029557_P001	Maize	plastid	42.56	40.08
Zm00001d038806_P001	Maize	nucleus	38.33	38.71
Zm00001d008786_P001	Maize	plastid	5.1	26.4
Zm00001d039497_P002	Maize	nucleus	0.76	9.21

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100383416	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
ProteinID:AQK40546.1	InterPro:ATPase_AAA_core	EMBL:BT067173	UniProt:C0PFV4	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151
PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871
PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	UniParc:UPI000195CB3F	InterPro:UVR_dom	EnsemblPlantsGene:Zm00001d024009	EnsemblPlants:Zm00001d024009_P001	EnsemblPlants:Zm00001d024009_T001
SEG:seg	:	:	:	:	:

Description

cytokinin inducible protease1Chaperone protein ClpC1 chloroplastic

Coordinates

chr10:+:36528738..36535462

Molecular Weight (calculated)

102047.0 Da

IEP (calculated)

6.597

GRAVY (calculated)

-0.314

Length

921 amino acids

Sequence
(BLAST)

001: MAGTLLQSVA LGTPFGGRMR THCWRSHGTR RPASMLAVSL SRPVKMSAFV GLRSVHSFSV TPTVSNSRSA VASYRSSRQT RRSRFVTQAM FERFTEKAIK
101: VIMLAQEEAR RLGHNFVGTE QILLGLIGEG TGIAAKVLKS MGINLKDARV EVEKIIGRGN GFVAVEIPFT PRAKRVLELS LEEARQLGHN YIGSEHLLLG
201: LLREGEGVAA RVLESLGADP SNIRTQVIRM IGETTEAVGA GVGGGSSGNK MPTLEEYGTN LTKLAEEGKL DPVVGRQPQI ERVVQILGRR TKNNPCLIGE
301: PGVGKTAIAE GLAQRISTGD VPETIEGKKV ITLDMGLLVA GTKYRGEFEE RLKKLMEEIK QSDEIILFID EVHTLIGAGA AEGAIDAANI LKPALARGEL
401: QCIGATTLDE YRKHIEKDPA LERRFQPVKV PEPTVDETIE ILRGLRERYE IHHKLRYTDE ALIAAAKLSY QYISDRFLPD KAIDLIDEAG SRVRLQHAQV
501: PEEARELDKE LKQVTKQKNE AVRSQDFEKA GELRDREMEL KAQITALIDK SKELSKAEEE SGETGPMVNE EDIQHIVSSW TGIPVEKVSS DESDKLLKME
601: ETLHKRVIGQ DEAVVAISRS IRRARVGLKN PNRPIASFIF AGPTGVGKSE LAKALAAYYF GSEEAMIRLD MSEFMERHTV SKLIGSPPGY VGYTEGGQLT
701: EAVRRRPYTV VLFDEIEKAH PDVFNMMLQI LEDGRLTDSK GRTVDFKNTL LIMTSNVGSS VIEKGGRKIG FDLDSDEKDS SYSRIKSLVI EEMKQYFRPE
801: FLNRLDEMIV FRQLTKLEVK EIADIMLQEV FDRLKAKDIN LQVTEKFKER VVDEGYNPSY GARPLRRAIM RLLEDSLAEK MLAGEVKEGD SAIVDVDSEG
901: KVVVLNGQGG IPELSTPAIT V

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.