Factsheet for Zm00001d016664_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05165	Sorghum	plastid	94.3	93.31
Os02t0526400-01	Rice	cytosol, plasma membrane	76.77	88.44
HORVU5Hr1G081860.1	Barley	cytosol	69.8	86.52
Zm00001d036813_P001	Maize	cytosol	10.24	85.84
TraesCS5B01G321800.1	Wheat	plastid	82.58	84.36
TraesCS5A01G321300.1	Wheat	plastid	82.37	84.23
TraesCS5D01G328100.1	Wheat	plastid	81.94	83.44
Zm00001d003847_P001	Maize	plastid	73.71	74.89
GSMUA_Achr6P23780_001	Banana	cytosol	62.72	70.3
Zm00001d008786_P001	Maize	plastid	11.62	61.8
VIT_19s0014g00020.t01	Wine grape	plastid	60.82	60.89
CDY38846	Canola	plastid	58.92	59.94
Bra029193.1-P	Field mustard	plastid	59.24	59.49
AT5G51070.1	Thale cress	plastid	59.24	59.37
CDY32646	Canola	plastid	58.5	59.31
CDX71686	Canola	plastid	58.29	59.23
Solyc03g117950.2.1	Tomato	nucleus	59.77	58.71
PGSC0003DMT400036893	Potato	plastid	59.77	58.65
KRH63903	Soybean	plastid	58.08	58.14
GSMUA_Achr10P...	Banana	plastid	60.82	58.12
Zm00001d039497_P002	Maize	nucleus	4.65	57.89
KRH54048	Soybean	plastid	57.97	57.79
Zm00001d003894_P004	Maize	plastid	43.19	44.41
Zm00001d025273_P019	Maize	plastid	42.87	44.08
Zm00001d024009_P001	Maize	plastid	42.45	43.65
Zm00001d029672_P004	Maize	plastid	10.56	42.73
Zm00001d039640_P001	Maize	cytoskeleton, cytosol, nucleus	5.91	37.33
Zm00001d038806_P001	Maize	nucleus	35.9	37.28
Zm00001d029557_P001	Maize	plastid	37.59	36.4
Zm00001d047302_P002	Maize	plastid	37.38	36.34
Zm00001d015520_P001	Maize	mitochondrion	36.64	35.12

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100383653	MapMan:19.4.2.9.5	Gene3D:3.40.50.300	UniProt:A0A1D6H9K3
InterPro:AAA+_ATPase	ProteinID:AQK71386.1	InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2
InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987
GO:GO:0019538	GO:GO:0034605	GO:GO:1901002	GO:GO:1902584	InterPro:IPR036628	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PANTHER:PTHR43572	PANTHER:PTHR43572:SF17	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	UniParc:UPI000221D1CB	EnsemblPlantsGene:Zm00001d016664	EnsemblPlants:Zm00001d016664_P001	EnsemblPlants:Zm00001d016664_T001	SEG:seg

Description

Chaperone protein ClpD chloroplastic

Coordinates

chr5:+:171903271..171908275

Molecular Weight (calculated)

102375.0 Da

IEP (calculated)

6.582

GRAVY (calculated)

-0.138

Length

947 amino acids

Sequence
(BLAST)

001: MEVCCCSTSS SVLTAGGRGA AARRLAAPAA RWGAAGFGRA VVLAHPLPRP ASAAAAAPTR RARRGGVGVV RAVFERFTER AVKAVVLSQR EARGLGEPAV
101: APRHLLLGLV AEDRSSGGFL SSGINIERAR EECRGIAASA RDADSATAAS RPGSSGLDTD VPFAAPTKQV FDVAVVLSKN MGSSFVSPEH LAIALFSLDD
201: PTTNNLLRSL GADPSHLASV AVDRLQAELA KDGRDPAEPS SFKVPKKAPA AAGRSAFSQS LTKKKDKGAL DQFCLDLTTQ ASGGFIDPII GREEEIERVV
301: QIVCRRTKNN PILLGEAGVG KTAIAEGLAL RIANGDVPIY LVAKRILSLD VGLLIAGAKE RGELESRVTN IIREVREAGD VILFIDEVHN LIGSGTVGKS
401: KGSGLDIGNL LKPALARGEL QCIAATTLDE HRMHFEKDKA LARRFQPVLV DEPSQEDAVK ILLGLREKYE TYHKCKFTLE AINAAVYLSA RYIPDRQLPD
501: KAIDLIDEAG SRARMESFNR KKEGQSSILL KSPDEYWQEI RAAQAMHEVV LSNKEKYSPN ENAEESGSAN VEALHRDNIE STSTSSLSAD EPVVVGTEEI
601: ARVASLWSGI PVQQLTADDK KLLVGLDDEL RKRVIGQDDA VVAISRAVKR SRVGLNDPDR PIATLLFCGP TGVGKTELTK ALAASYFGSE SAMLRLDMSE
701: YMERHTVSKL IGSPPGYIGY GETGTLTEAV RRKPFTVVLL DEIEKAHPDI FNILLQIFED GHLTDSQGRR VSFKNTLIVM TSNVGSTSIS KGRQSIGFLK
801: EDTESGSYFA MKSLVMEELK AFFRPELLNR IDEMVVFRPL EKTQMLAILD IILKEVKGRL LALGIGLEVS DAMKDLICQE GYDKSYGARP LRRAVTHIIE
901: DVISEAILFG EFKPGDTILM DIDAEGKPCM GHLDQQIVQV SDPTRAI

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.