CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016664_P001	Maize	plastid	93.31	94.3
Os02t0526400-01	Rice	cytosol, plasma membrane	76.59	89.17
HORVU5Hr1G081860.1	Barley	cytosol	69.38	86.91
TraesCS5A01G321300.1	Wheat	plastid	81.5	84.23
TraesCS5B01G321800.1	Wheat	plastid	81.5	84.14
TraesCS5D01G328100.1	Wheat	plastid	80.98	83.33
OQU81478	Sorghum	cytosol	68.03	76.5
GSMUA_Achr6P23780_001	Banana	cytosol	62.07	70.3
VIT_19s0014g00020.t01	Wine grape	plastid	60.5	61.21
CDY38846	Canola	plastid	59.04	60.69
Bra029193.1-P	Field mustard	plastid	59.35	60.23
CDY32646	Canola	plastid	58.52	59.96
AT5G51070.1	Thale cress	plastid	59.04	59.79
CDX71686	Canola	plastid	58.2	59.76
KRH63903	Soybean	plastid	57.89	58.56
PGSC0003DMT400036893	Potato	plastid	58.93	58.45
Solyc03g117950.2.1	Tomato	nucleus	58.83	58.4
GSMUA_Achr10P...	Banana	plastid	60.4	58.32
KRH54048	Soybean	plastid	57.68	58.11
EES12052	Sorghum	plastid	42.84	44.52
KXG23307	Sorghum	plastid	42.42	44.08
EES13207	Sorghum	cytosol	18.91	43.2
OQU85081	Sorghum	mitochondrion, plastid	30.83	41.09
OQU79828	Sorghum	plastid	32.6	40.31
OQU81585	Sorghum	cytosol	25.6	37.93
EES01468	Sorghum	nucleus	35.21	36.83
EES19828	Sorghum	nucleus	35.11	36.8
EER94678	Sorghum	plastid	37.1	36.11
EES06386	Sorghum	mitochondrion	36.78	35.56

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.5	Gene3D:3.40.50.300	EntrezGene:8059613	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	UniProt:C5XTC1	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	EnsemblPlants:EES05165	ProteinID:EES05165	ProteinID:EES05165.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0019538	GO:GO:0034605	GO:GO:1901002	GO:GO:1902584
InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572	PANTHER:PTHR43572:SF17	SMART:SM00382
SMART:SM01086	EnsemblPlantsGene:SORBI_3004G162400	SUPFAM:SSF52540	SUPFAM:SSF81923	unigene:Sbi.9296	UniParc:UPI0001A856E2
RefSeq:XP_002452189.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:51171862..51176647

Molecular Weight (calculated)

103679.0 Da

IEP (calculated)

7.106

GRAVY (calculated)

-0.154

Length

957 amino acids

Sequence
(BLAST)

001: MEVCCCSTSS SSSVLTVGHG GAARMLAAPA GRWGAAAGFG RAMVLAHQLP LPLPLPLPRP AARARARPAP RRRRGGGVVR AVFERFTERA VKAVVLSQRE
101: ARGLGEPAVA PRHLFLGLVA EDRSSGGFLS SGINIERARE ECRGIAAARD DADSTAAPSS RPGSGGLDTD VPFSATAKQV FDVAVVLSKN MGASFISPEH
201: LAIALFTLDD PTTNNLLRSL GADPSHLASV AVDRLQAELA KDGREPAEPS SFKVPKKAPA GAGRSAFSHS LTKKKDKGAL DQFCLDLTTQ ASGGFIDPII
301: GREDEIERVV QIICRRTKNN PILLGEAGVG KTAIAEGLAL RIANGDVPIY LVAKRILSLD VGLLIAGAKE RGELESRVTN IIREVREAGD VILFIDEVHN
401: LIGSGTVGKG KGSGLDIGNL LKPALARGEL QCIAATTLDE HRMHFEKDKA LARRFQPVLV DEPSQEDAVK ILLGLREKYE TYHKCKFTLE AINAAVYLSA
501: RYIPDRQLPD KAIDLIDEAG SRARMESFNK KKEGQSSILL KSPDEYWQEI RAAQAMHEVV LSNKAKYSPN ENAQESGSAT VEAPSRDNIE STSGSSLSAD
601: EPIVVGTEEI ARVASLWSGI PVQQLTADDK KLLVGLDDEL RKRVIGQDDA VVAISRAVKR SRVGLNDPDR PIATLLFCGP TGVGKTELTK ALAASYFGSE
701: SAMLRLDMSE YMERHTVSKL IGSPPGYIGY GETGTLTEAV RRKPFTVVLM DEIEKAHPDI FNILLQIFED GHLTDSQGRK VSFKNTLIVM TSNVGSTTIS
801: KGRQSIGFLK EDTESSSYFA MKSLVMEELK AFFRPELLNR IDEMVVFRPL EKTQMLAILD IILKEVKGRL LALGIGLEVS EAMKHLICQE GYDKSYGARP
901: LRRAVAHIIE DVISEAILFG EFKPGDTILM DIDAEGKPCM NHLDRQIVQV SDPTRTF

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.