CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38846	Canola	plastid	96.68	96.99
Bra029193.1-P	Field mustard	plastid	97.75	96.82
CDX71686	Canola	plastid	91.22	91.42
AT5G51070.1	Thale cress	plastid	91.86	90.79
GSMUA_Achr6P23780_001	Banana	cytosol	60.6	66.98
VIT_19s0014g00020.t01	Wine grape	plastid	67.77	66.91
Solyc03g117950.2.1	Tomato	nucleus	67.45	65.35
PGSC0003DMT400036893	Potato	plastid	67.24	65.08
HORVU5Hr1G081860.1	Barley	cytosol	52.78	64.53
OQU81478	Sorghum	cytosol	58.78	64.51
HORVU2Hr1G072020.5	Barley	plastid	56.75	63.55
Os02t0526400-01	Rice	cytosol, plasma membrane	55.35	62.9
KRH63903	Soybean	plastid	63.28	62.47
KRH54048	Soybean	plastid	63.17	62.11
Zm00001d003847_P001	Maize	plastid	61.13	61.27
TraesCS2B01G307500.1	Wheat	plastid	60.71	60.06
TraesCS2A01G291100.1	Wheat	plastid	60.71	59.94
TraesCS2D01G289100.1	Wheat	plastid	60.71	59.94
TraesCS5B01G321800.1	Wheat	plastid	59.21	59.65
TraesCS5A01G321300.1	Wheat	plastid	58.89	59.4
TraesCS5D01G328100.1	Wheat	plastid	59.1	59.35
EES05165	Sorghum	plastid	59.96	58.52
Zm00001d016664_P001	Maize	plastid	59.31	58.5
GSMUA_Achr10P...	Banana	plastid	58.67	55.3
CDY64710	Canola	cytosol	42.29	48.05
CDX84888	Canola	cytosol	41.86	47.28
CDY64721	Canola	cytosol	11.67	44.67
CDY45800	Canola	plastid	42.83	43.43
CDX68504	Canola	mitochondrion	43.15	43.43
CDX83052	Canola	mitochondrion	43.04	43.37
CDY05878	Canola	mitochondrion	43.15	43.24
CDX85552	Canola	cytosol	11.56	42.35
CDX73074	Canola	cytosol	31.26	39.3
CDX96531	Canola	cytosol	31.26	39.3
CDX68190	Canola	nucleus	33.51	38.4
CDY53470	Canola	mitochondrion	32.12	37.83
CDX85823	Canola	nucleus	34.9	36.92
CDX90991	Canola	plastid	37.47	36.31
CDY68892	Canola	mitochondrion, plastid	32.12	36.19
CDY26423	Canola	plastid	36.94	35.46
CDX76768	Canola	mitochondrion	36.94	35.46
CDX69524	Canola	plastid	36.94	35.46
CDY56280	Canola	mitochondrion	36.94	35.42
CDX85551	Canola	plastid	21.73	31.04

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.5	Gene3D:3.40.50.300	GO:A0A078H493	UniProt:A0A078H493
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	EnsemblPlants:CDY32646	ProteinID:CDY32646	ProteinID:CDY32646.1	InterPro:ClpA/B
InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00052683001	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572	PANTHER:PTHR43572:SF20
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0004EEF542	SEG:seg

Description

BnaC03g16140DBnaC03g16140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H493]

Coordinates

chrLK032297:-:414481..419367

Molecular Weight (calculated)

102096.0 Da

IEP (calculated)

5.714

GRAVY (calculated)

-0.240

Length

934 amino acids

Sequence
(BLAST)

001: MEVLSTSTPL TLHTRRLPSS SSSSPVTSFA ASSLSSFSSS YLGISLSNNR NHRLSTTPTN SRRLPRNKRN KLTPISAVFE RFTERAIRAI IFSQKEAKSL
101: GKEMVYPQHL LLGLIAEDRD PQGFLGSGAV SSIWDEASSD DSGLSESSSS SYSRSTDMPF SISTKRVFEA AVEYSRTLEC QYIAPEHIAV GLFTVDDGSA
201: GKVLKRLGAN MNLLTAAALT RLKGEIAKDG REPPSSKGNS DASPNGRVGG PGRTKEKSVL EQFCVDLTAR ASEGLIDPVI GRGKEVQRVI QILCRRTKNN
301: PILLGEAGVG KTAIAEGLAI SIAEANAPGF LLTKRIMSLD IGLLMAGAKE RGELESRVTA LISEVKKSGK VILFIDEVHT LIGSGTVGRG NKGSGLDIAN
401: LLKPPLGRGE LQCIASTTLD EFRSQFEKDK ALARRFQPVL IDEPSEEDAV KILIGLREKY EAHHNCKYTM EAIDAAVYLS SRYIADRFLP DKAIDLIDEA
501: GSRARIQAFR KKKEDAICIL SKPPDDYWQE IRTVQAMHEV VLSSRPNQEY GNAIADESNE LVEESSLPPA AGNDEPIQVG PDDIAAVASA WSGIPVQQIT
601: ADERMLLMGL EDQLRNRVVG QDEAVAAISR AVKRSRVGLK DPDRPIAAML FCGPTGVGKT ELTKALAANY FGSEESMLRL DMSEYMERHT VSKLIGSPPG
701: YVGFEEGGML TEAIRRRPFT VVLFDEIEKA HPDIFNILLQ LFEDGHLTDS QGRRVSFKNA LIIMTSNVGS SAIAKGRQRS IGFILDDDEE EASYSGMKAL
801: VVEELKNYFR PELLNRIDEI VIFRQLEQAQ MMEILNLMLQ DLKSRLVALG VGLEVSEPVK ELICRQGYDP AYGARPLRRT VTEIVEDPLS EAFLAGSFKP
901: GDTAFVVLDD TGNPSVRTKP DSYTVRVTDK TSIA

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.