CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003847_P001	Maize	plastid	95.53	87.23
HORVU2Hr1G072020.5	Barley	plastid	83.67	85.37
TraesCS2B01G307500.1	Wheat	plastid	86.72	78.18
TraesCS2D01G289100.1	Wheat	plastid	86.84	78.12
TraesCS2A01G291100.1	Wheat	plastid	86.72	78.01
GSMUA_Achr6P23780_001	Banana	cytosol	69.68	70.18
EES05165	Sorghum	plastid	76.5	68.03
VIT_19s0014g00020.t01	Wine grape	plastid	66.98	60.25
CDY38846	Canola	plastid	64.98	59.4
AT5G51070.1	Thale cress	plastid	65.45	58.94
GSMUA_Achr10P...	Banana	plastid	68.63	58.93
CDX71686	Canola	plastid	64.39	58.8
CDY32646	Canola	plastid	64.51	58.78
Bra029193.1-P	Field mustard	plastid	65.1	58.75
Solyc03g117950.2.1	Tomato	nucleus	64.75	57.16
PGSC0003DMT400036893	Potato	plastid	64.63	56.99
KRH63903	Soybean	plastid	63.1	56.77
KRH54048	Soybean	plastid	62.98	56.42
EES13207	Sorghum	cytosol	21.15	42.96
KXG23307	Sorghum	plastid	45.95	42.45
EES12052	Sorghum	plastid	45.71	42.24
OQU85081	Sorghum	mitochondrion, plastid	33.96	40.25
OQU79828	Sorghum	plastid	35.61	39.15
OQU81585	Sorghum	cytosol	28.32	37.31
EES19828	Sorghum	nucleus	39.84	37.13
EES01468	Sorghum	nucleus	39.48	36.72
EER94678	Sorghum	plastid	40.31	34.89
EES06386	Sorghum	mitochondrion	40.07	34.44

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.5	Gene3D:3.40.50.300	UniProt:A0A1Z5RCM2	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N
InterPro:Clp_N_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	InterPro:IPR036628	EnsemblPlants:OQU81478	ProteinID:OQU81478	ProteinID:OQU81478.1
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572	PANTHER:PTHR43572:SF17	SMART:SM00382	SMART:SM01086
EnsemblPlantsGene:SORBI_3006G065100	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI000B8B97E3	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:42497973..42504258

Molecular Weight (calculated)

93017.5 Da

IEP (calculated)

6.949

GRAVY (calculated)

-0.174

Length

851 amino acids

Sequence
(BLAST)

001: MEARGMGDET VAPHHLLLGL VAEDRTLVGF LGSGLRVDRA REACRDALGK PGPAQAATGM ATDVPFSSAS KRVFEAAVEF SRNMGCNFIS PEHIALGLFD
101: LDDPTTNRIL KSLGADPSQL AKQALNRVQG ELAKDGREPV GLSSFKVREK SAAGAGKSAI VKYSNKKKEK SALAQFCVDL TMRASGGLID PVIGRKEEIG
201: RVVQIICRRT KNNPILLGEA GVGKTAIAEG LALKIADGDV PIFLVGKRIL SLDVALLMAG AKERGELEAR ITSLLREVRK AGDVMLFIDE VHTLIGSGIA
301: GRGSKGAGLD IANLLKPALA RGELQCIAST TLDEHRLHFE KDKALARRFQ PVFVNEPSQE DAVKILLGLR EKYEAYHKCK YTLEGINAAV YLSARYIPDR
401: HLPDKAIDLI DEAGSRARME SFKRKKEEQC SILSKSPDQY WQEIRAVQSM HEVALTNRLK YSLDENEKED GVSIEVIGEN KIASPSMPPT SVDEPILVDS
501: EEIARVTSLW SGIPVQKLTA DDTKILVGLD DELRKRVIGQ DDAVVAISRA VKRSRVGLND PDRPIATLLF CGPTGVGKTE LTKALAASYF GSEAAMVRLD
601: MSEYMERHTV SKLIGSPPGY MGFGEGGTLT EAVRRKPFTV VLLDEIEKAH PDIFNILLQV FEDGHLTDSQ GRRVSFKNTL IVMTSNVGST SISSGRRSIG
701: FSTQKDTEET TYAVMKSLVM EELKAFFRPE LLNRLDEVVV FRPLEKTQMM AILNLILQEV KSRLLALGIG LEISDSMKNL ISQQGYDRSY GARPLRRAVT
801: QLVEDVISEA ILFGQFKPGD TILMDTDATG KPCLSRLNDQ TVQLSDPAPT M

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.