Factsheet for Zm00001d003847_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039497_P002	Maize	nucleus	7.83	96.05
OQU81478	Sorghum	cytosol	87.23	95.53
Zm00001d036813_P001	Maize	cytosol	11.27	92.92
HORVU2Hr1G072020.5	Barley	plastid	76.72	85.73
TraesCS2A01G291100.1	Wheat	plastid	85.52	84.25
TraesCS2B01G307500.1	Wheat	plastid	85.3	84.22
TraesCS2D01G289100.1	Wheat	plastid	85.41	84.14
Zm00001d008786_P001	Maize	plastid	15.45	80.9
Zm00001d016664_P001	Maize	plastid	74.89	73.71
GSMUA_Achr6P23780_001	Banana	cytosol	63.95	70.53
VIT_19s0014g00020.t01	Wine grape	plastid	63.73	62.79
CDY38846	Canola	plastid	61.8	61.87
CDX71686	Canola	plastid	61.48	61.48
AT5G51070.1	Thale cress	plastid	62.23	61.38
Bra029193.1-P	Field mustard	plastid	61.91	61.19
CDY32646	Canola	plastid	61.27	61.13
GSMUA_Achr10P...	Banana	plastid	64.59	60.75
Solyc03g117950.2.1	Tomato	nucleus	62.23	60.17
PGSC0003DMT400036893	Potato	plastid	62.12	60.0
KRH63903	Soybean	plastid	60.3	59.41
KRH54048	Soybean	plastid	60.09	58.95
Zm00001d024009_P001	Maize	plastid	44.21	44.73
Zm00001d003894_P004	Maize	plastid	44.1	44.63
Zm00001d025273_P019	Maize	plastid	43.99	44.52
Zm00001d029672_P004	Maize	plastid	10.41	41.45
Zm00001d038806_P001	Maize	nucleus	36.27	37.06
Zm00001d039640_P001	Maize	cytoskeleton, cytosol, nucleus	5.9	36.67
Zm00001d029557_P001	Maize	plastid	37.77	35.99
Zm00001d047302_P002	Maize	plastid	37.45	35.83
Zm00001d015520_P001	Maize	mitochondrion	37.66	35.53

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100383428	MapMan:19.4.2.9.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EMBL:BT067209	UniProt:C0PFZ0	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2
InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	InterPro:IPR036628	ProteinID:ONM17820.1
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572	PANTHER:PTHR43572:SF17	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI000195CB9D	EnsemblPlantsGene:Zm00001d003847	EnsemblPlants:Zm00001d003847_P001	EnsemblPlants:Zm00001d003847_T001
SEG:seg	:	:	:	:	:

Description

Chaperone protein ClpD chloroplastic

Coordinates

chr2:-:61984604..61991864

Molecular Weight (calculated)

101314.0 Da

IEP (calculated)

8.508

GRAVY (calculated)

-0.125

Length

932 amino acids

Sequence
(BLAST)

001: MEACCCSSSS APSASILAAA PDVALRRRIP AAAGGRTPAR PLRVSAVMLA TAVPRRRGPG VIRAVFERFT ERAVKAVVFS QREARGMGDD TVAPHHLLLG
101: LIAEDRTLVG FLGSGLRVER AREACRDALG KAGPAQAATG LATDVPFSAA SKRVFEAAVE FSRNIGCNFI SPEHIALGLF DLDDPTTNRI LKSLGADPSQ
201: LAKQALKRVQ GELAKDGREP VGLSSFKVRE RSAAGAGKSA IVKYSNKKKE KSALAQFCVD LTMRASGGLI DPVIGRKEEI ERVVQIICRR TKNNPILLGE
301: AGVGKTAIAE GLALKIANGD VPIFLVGKRI LSLDVALLMA GAKERGELEA RITSLLREVR KAGDVMLFID EVHTLIGSGI AGRGSKGAGL DIANLLKPAL
401: SRGELQCIAS TTLDEHRLHF EKDKALARRF QPVLVNEPSQ EDAVKILLGL REKYETYHKC KYTLEGINAA VYLSARYIPD RHLPDKAIDL IDEAGSRARM
501: ESFKRKKEEQ CSILSKSPDE YWQEIRAVQS THEVALANRL KYSLDENDKD DGVNIEVIGD NKIASPSMPP TSVDEPILVG SEEIARVTSL WSGIPVQKLT
601: ADETKLLVGL DDELRKRVIG QDDAVVAISR AVKRSRVGLN DPDRPIATLL FCGPTGVGKT ELTKALAASY FGSESAMIRL DMSEYMERHA VSKLIGSPPG
701: YMGFGEGGTL TEAVRRTPFT VVLLDEIEKA HPDIFNILLQ VFEDGHLTDS QGRRVSFKNT LIVMTSNVGS TSISSGRRSI GFSTQRDTEE TTYAAMKSLV
801: MEELKAFFRP ELLNRLDEVV VFHPLEKTQM MAILNLILQE VKSRLLALGI GLEVSESMKI LISQQGYDRS YGARPLRRAV TQLVEDVISE AILFGQFKPG
901: DTILMGTDAT GKPCLSRLND QTVQLSDTAP TI

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.