CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY39879

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	CDY39879	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64721	Canola	cytosol	58.43	61.07
Bra023518.1-P	Field mustard	plastid	99.22	26.27
CDX90991	Canola	plastid	98.43	26.04
AT5G15450.1	Thale cress	plastid	94.51	24.9
CDX69524	Canola	plastid	94.9	24.87
CDY26423	Canola	plastid	94.9	24.87
KRH44979	Soybean	nucleus, plastid	86.27	22.59
KRH01254	Soybean	nucleus, plastid	85.88	22.48
VIT_14s0108g01500.t01	Wine grape	plastid	84.31	22.03
KRH18417	Soybean	nucleus	84.31	21.98
Solyc02g088610.2.1	Tomato	plastid	83.53	21.73
KRG93616	Soybean	nucleus	83.14	21.68
PGSC0003DMT400003652	Potato	cytosol, plastid	83.14	21.65
GSMUA_Achr6P16670_001	Banana	plastid	78.04	21.24
Os03t0426900-01	Rice	plastid	79.22	20.65
TraesCSU01G131300.1	Wheat	plastid	76.86	20.19
Zm00001d029557_P001	Maize	plastid	77.25	20.14
EER94678	Sorghum	plastid	77.25	20.04
TraesCS5A01G547300.1	Wheat	golgi, plastid	76.47	20.02
TraesCS4B01G380800.1	Wheat	plastid	76.47	20.0
Zm00001d047302_P002	Maize	plastid	76.08	19.92
CDY53470	Canola	mitochondrion	57.65	18.54
HORVU4Hr1G090440.2	Barley	plastid	76.47	18.43
CDY68892	Canola	mitochondrion, plastid	58.43	17.97
CDX73074	Canola	cytosol	49.02	16.82
CDX96531	Canola	cytosol	49.02	16.82
CDX76768	Canola	mitochondrion	62.75	16.44
CDY56280	Canola	mitochondrion	62.75	16.43
CDX68190	Canola	nucleus	49.02	15.34
CDX85823	Canola	nucleus	49.41	14.27
CDY64710	Canola	cytosol	43.53	13.5
CDX84888	Canola	cytosol	43.14	13.3
CDX83052	Canola	mitochondrion	43.92	12.08
CDX68504	Canola	mitochondrion	43.92	12.07
CDY05878	Canola	mitochondrion	43.92	12.02
CDY45800	Canola	plastid	43.14	11.94
CDY38846	Canola	plastid	42.35	11.6
CDX71686	Canola	plastid	42.35	11.59
CDY32646	Canola	plastid	42.35	11.56
CDX85551	Canola	plastid	2.35	0.92

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078D945	InterPro:ATPase_AAA_core	EnsemblPlants:CDX85552
ProteinID:CDX85552	ProteinID:CDX85552.1	InterPro:ClpA/B	InterPro:Clp_ATPase_C	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00143268001	InterPro:P-loop_NTPase	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	PANTHER:PTHR11638	PANTHER:PTHR11638:SF144	SMART:SM01086	SUPFAM:SSF52540	UniParc:UPI0004EDF575

Description

BnaA02g02610D

Coordinates

chrLK031842:+:608787..609791

Molecular Weight (calculated)

28903.4 Da

IEP (calculated)

4.714

GRAVY (calculated)

-0.412

Length

255 amino acids

Sequence
(BLAST)

001: MSEYMEKHAV SRLIGAPPGY VGYEEGGQLT ETVRRRPYSV ILFDEIEKAH GDVFNVFLQI LDDGRVTDSQ GRTVSFTNTV IIMTSNVGSQ FILNNTDDDA
101: KELAYETIKQ RVMDAARSIF RPEFMNRVDE YIVFQPLDRD QINSIVRLQL ARVQKRIADR KMKIEVTDAA VDLLGSLGYD PNYGARPVKR VIQQNIENEL
201: AKGILRGDFK EEDGILIDTE VTAFSNGQLP QQKLIFKKIE SETADAGKEE EVFSK

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.