CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64710	Canola	cytosol	87.98	99.76
Bra018030.1-P	Field mustard	mitochondrion	94.74	99.44
CDX68504	Canola	mitochondrion	96.89	97.31
CDX83052	Canola	mitochondrion	96.46	96.98
GSMUA_Achr6P08050_001	Banana	cytosol	13.09	96.06
CDX84888	Canola	cytosol	82.3	92.74
AT3G48870.3	Thale cress	cytosol, plastid	91.42	89.5
GSMUA_Achr6P08040_001	Banana	cytosol	60.62	87.73
Os04t0397100-01	Rice	plastid	37.55	86.85
CDY45800	Canola	plastid	85.62	86.64
Solyc12g042060.1.1	Tomato	plastid	84.87	85.7
KRH54115	Soybean	plastid	84.76	85.68
PGSC0003DMT400037527	Potato	cytosol	84.76	85.59
KRH63851	Soybean	plastid	84.55	85.47
KRH59753	Soybean	endoplasmic reticulum	83.91	85.09
KRH41069	Soybean	mitochondrion, plastid	83.69	84.87
PGSC0003DMT400036961	Potato	plastid	84.23	84.86
GSMUA_Achr3P18630_001	Banana	plastid	82.08	84.72
Solyc03g118340.2.1	Tomato	nucleus	83.69	84.23
TraesCS2B01G304200.1	Wheat	golgi	82.3	83.64
TraesCS2D01G285800.1	Wheat	plastid	82.3	83.64
HORVU2Hr1G071080.3	Barley	plastid	82.3	83.64
Zm00001d003894_P004	Maize	plastid	82.62	83.6
PGSC0003DMT400054236	Potato	plastid	81.55	83.52
TraesCS6D01G183600.2	Wheat	cytosol, plastid	82.08	83.52
Zm00001d025273_P019	Maize	plastid	82.51	83.5
TraesCS6A01G195200.1	Wheat	plastid	81.97	83.41
EES12052	Sorghum	plastid	82.4	83.39
KXG23307	Sorghum	plastid	82.4	83.39
TraesCS2A01G287300.2	Wheat	plastid	79.94	83.24
TraesCS6B01G233800.1	Wheat	plastid	81.76	83.19
Zm00001d024009_P001	Maize	plastid	82.08	83.06
Os12t0230100-01	Rice	plastid	81.87	83.03
GSMUA_Achr6P16470_001	Banana	plastid	77.9	82.88
TraesCS5A01G118900.1	Wheat	unclear	81.01	82.07
TraesCS5D01G118700.1	Wheat	plastid	80.9	81.96
TraesCS5B01G112500.1	Wheat	plastid	80.69	81.74
GSMUA_Achr8P09160_001	Banana	plastid	80.58	81.28
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	84.98	80.73
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	80.04	76.67
TraesCS4B01G082900.1	Wheat	mitochondrion	51.29	63.48
GSMUA_AchrUn_...	Banana	plastid	75.86	60.38
CDY64721	Canola	cytosol	12.02	45.9
CDX73074	Canola	cytosol	35.41	44.41
CDX96531	Canola	cytosol	35.19	44.15
CDX85552	Canola	cytosol	12.02	43.92
CDY38846	Canola	plastid	43.35	43.39
CDX71686	Canola	plastid	43.35	43.35
CDY32646	Canola	plastid	43.24	43.15
CDY53470	Canola	mitochondrion	36.48	42.88
CDY68892	Canola	mitochondrion, plastid	36.91	41.5
CDX68190	Canola	nucleus	36.16	41.35
CDX85823	Canola	nucleus	37.98	40.09
CDX90991	Canola	plastid	41.2	39.83
CDY56280	Canola	mitochondrion	41.42	39.63
CDX76768	Canola	mitochondrion	41.31	39.57
CDX69524	Canola	plastid	40.77	39.05
CDY26423	Canola	plastid	40.67	38.95
CDX85551	Canola	plastid	25.11	35.78

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	GO:A0A078F226	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlants:CDY05878	ProteinID:CDY05878	ProteinID:CDY05878.1	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00121677001	InterPro:IPR001943	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF8	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0004EEF8BB	InterPro:UVR_dom	SEG:seg	:

Description

BnaC08g20550D

Coordinates

chrLK031966:-:249905..254109

Molecular Weight (calculated)

103461.0 Da

IEP (calculated)

6.354

GRAVY (calculated)

-0.352

Length

932 amino acids

Sequence
(BLAST)

001: MARLLANSTS RSLLGSGRDF QSEDYRKPRR CVKMMMYTSQ TSVLSIQSFS GLRASSNALD RVARPSHDFF GKVNLQISSS RKGKASRGVT KAMFERFTEK
101: AIKVIMLSQE EARRLGHNFV GTEQILLGLI GEGTGIAAKV LKSMGINLKD SRVEVEKIIG RGSGFVAVEI PFTPRAKRVL ELSLEEARQL GHNYIGSEHL
201: LLGLLREGEG VAARVLENLG ADASNIRTQV IRMVGENNEV TASVGGGSSG NSKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL ARRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KTVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDDIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE AIQILHGLRE RYEIHHKLRY TDEALVAAAQ LSHQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL ERQLRQITKE KNEAVRGQDF EKAGSHRDRE IELRAEIAAV LAKGKEVNKA ETEAGEEGGP TVTESDIQHI VSTWTGIPVE KVSSDESSRL
601: LKMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME RHTVSKLIGS PPGYVGYTEG
701: GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDYD EKDSSYNRIK SLVTEELKQY
801: FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVVRLKD KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS MAEKMLSREI KDGDSVIVDV
901: DAEGSVVVLN GKNGSGDGFV AEEAMEDPIP VL

Best Arabidopsis Sequence Match ( AT3G48870.2 )
(BLAST)

001: MKMSSLKAPV LRIQATEYRE PRGRVKMMSS LQAPLLTIQS FSGLRAPSAL DYLGRPSPGF LVKYKLAKSS GREKASRCVP KAMFERFTEK AIKVIMLSQE
101: EARRLGHNFV GTEQILLGLI GEGTGIAAKV LKSMGINLKD SRVEVEKIIG RGSGFVAVEI PFTPRAKRVL ELSLEEARQL GHNYIGSEHL LLGLLREGEG
201: VAARVLENLG ADPSNIRTQV IRMVGENNEV TASVGGGSSG NSKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL ARRTKNNPCL IGEPGVGKTA
301: IAEGLAQRIA SGDVPETIEG KTVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR GELQCIGATT
401: IDEYRKHIEK DPALERRFQP VKVPEPTVEE AIQILQGLRE RYEIHHKLRY TDEALVAAAQ LSHQYISDRF LPDKAIDLID EAGSRVRLRH AQLPEEAREL
501: EKQLRQITKE KNEAVRSQDF EMAGSHRDRE IELKAEIANV LSRGKEVAKA ENEAEEGGPT VTESDIQHIV ATWTGIPVEK VSSDESSRLL QMEQTLHTRV
601: IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG QLTEAVRRRP
701: YTLVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDHDE KDSSYNRIKS LVTEELKQYF RPEFLNRLDE
801: MIVFRQLTKL EVKEIADIML KEVVARLEVK EIELQVTERF KERVVDEGFD PSYGARPLRR AIMRLLEDSM AEKMLSRDIK EGDSVIVDVD AEGSVVVLSG
901: TTGRVGGFAA EEAMEDPIPI L

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.