Factsheet for Solyc12g042060.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 25464976
plastid: 26371478
plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT5G50920.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037527	Potato	cytosol	99.67	99.67
GSMUA_Achr6P08050_001	Banana	cytosol	13.54	98.43
Solyc03g118340.2.1	Tomato	nucleus	94.15	93.84
CDX84888	Canola	cytosol	83.86	93.59
GSMUA_Achr6P08040_001	Banana	cytosol	64.25	92.08
CDY64710	Canola	cytosol	81.8	91.85
Os04t0397100-01	Rice	plastid	39.98	91.56
KRH63851	Soybean	plastid	89.82	89.91
KRH54115	Soybean	plastid	89.82	89.91
KRH59753	Soybean	endoplasmic reticulum	88.95	89.34
GSMUA_Achr3P18630_001	Banana	plastid	86.67	88.59
KRH41069	Soybean	mitochondrion, plastid	87.87	88.25
Zm00001d025273_P019	Maize	plastid	87.87	88.06
AT5G50920.1	Thale cress	plastid	88.52	87.94
TraesCS6D01G183600.2	Wheat	cytosol, plastid	87.22	87.88
TraesCS6A01G195200.1	Wheat	plastid	87.22	87.88
EES12052	Sorghum	plastid	87.65	87.84
Zm00001d003894_P004	Maize	plastid	87.65	87.84
HORVU2Hr1G071080.3	Barley	plastid	87.22	87.79
Bra022751.1-P	Field mustard	plastid	88.3	87.73
TraesCS6B01G233800.1	Wheat	plastid	87.0	87.66
TraesCS2D01G285800.1	Wheat	plastid	87.0	87.57
TraesCS2B01G304200.1	Wheat	golgi	87.0	87.57
CDY45800	Canola	plastid	87.32	87.51
TraesCS2A01G287300.2	Wheat	plastid	84.51	87.15
Bra018030.1-P	Field mustard	mitochondrion	83.42	86.71
GSMUA_Achr6P16470_001	Banana	plastid	82.12	86.53
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	91.66	86.24
KXG23307	Sorghum	plastid	85.7	85.88
Os12t0230100-01	Rice	plastid	85.37	85.75
Zm00001d024009_P001	Maize	plastid	85.48	85.67
CDX68504	Canola	mitochondrion	85.7	85.24
Bra029922.1-P	Field mustard	mitochondrion	85.59	85.13
CDX83052	Canola	mitochondrion	85.48	85.11
CDY05878	Canola	mitochondrion	85.7	84.87
TraesCS5A01G118900.1	Wheat	unclear	84.18	84.46
TraesCS5B01G112500.1	Wheat	plastid	84.18	84.46
TraesCS5D01G118700.1	Wheat	plastid	83.97	84.24
GSMUA_Achr8P09160_001	Banana	plastid	83.53	83.44
AT3G48870.3	Thale cress	cytosol, plastid	84.72	82.14
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	83.75	79.44
TraesCS4B01G082900.1	Wheat	mitochondrion	52.33	64.14
GSMUA_AchrUn_...	Banana	plastid	80.06	63.11
Solyc06g011380.2.1	Tomato	cytosol, plastid	13.0	58.54
Solyc03g117950.2.1	Tomato	nucleus	43.99	42.12
Solyc06g082560.1.1	Tomato	plastid	37.59	40.63
Solyc02g088610.2.1	Tomato	plastid	41.82	39.39
Solyc03g115230.2.1	Tomato	plastid	38.68	39.19
Solyc06g011400.2.1	Tomato	nucleus	21.89	38.19
Solyc06g011370.2.1	Tomato	plastid	9.75	30.2

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	UniProt:K4DF00
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF8
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	EnsemblPlantsGene:Solyc12g042060.1	EnsemblPlants:Solyc12g042060.1.1
UniParc:UPI000276A990	InterPro:UVR_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:40789176..40793603

Molecular Weight (calculated)

102202.0 Da

IEP (calculated)

6.193

GRAVY (calculated)

-0.337

Length

923 amino acids

Sequence
(BLAST)

001: MARALVQSTS IPSSVAGERT TKFNGSGKTK RAVTMLCNAQ SSSLTLRDFT GLRGCNAIDT LVRSGQTLQS KVAAATYVRR PRGCRFVPKA MFERFTEKAI
101: KVIMLAQEEA RRLGHNFVGT EQILLGLIGE GTGIAAKVLK SMGINLKDAR VEVEKIIGRG SGFVAVEIPF TPRAKRVLEL SLEEARQLGH NYIGSEHLLL
201: GLLREGEGVA ARVLENLGAD PSNIRTQVIR MVGESNEAVG ASVGGGTSGQ KMPTLEEYGT NLTKLAEEGK LDPVVGRQPQ IERVTQILGR RTKNNPCLIG
301: EPGVGKTAIA EGLAQRIANG DVPETIEGKK VITLDMGLLV AGTKYRGEFE ERLKKLMEEI KQSDEIILFI DEVHTLIGAG AAEGAIDAAN ILKPALARGE
401: LQCIGATTLD EYRKHIEKDP ALERRFQPVK VPEPTVDETI QILKGLRERY EIHHKLRYTD EALVAAAQLS YQYISDRFLP DKAIDLIDEA GSRVRLRHAQ
501: LPEEAKELEK ELRQITKEKN EAVRGQDFEK AGELRDREMD LKAQITALID KNKEVSKAES EAADTGPLVT EADIQHIVSS WTGIPVEKVS TDESDRLLKM
601: EETLHTRIIG QDEAVKAISR AIRRARVGLK NPNRPIASFI FSGPTGVGKS ELAKALAAYY FGSEEAMIRL DMSEFMERHT VSKLIGSPPG YVGYTEGGQL
701: TEAVRRRPYT VVLFDEIEKA HPDVFNMMLQ ILEDGRLTDS KGRTVDFKNT LLIMTSNVGS SVIEKGGRRI GFDLDLDEKD SSYNRIKSLV TEELKQYFRP
801: EFLNRLDEMI VFRQLTKLEV KEIADIMLKE VFERLKVKEI ELQVTERFRD RVVDEGYNPS YGARPLRRAI MRLLEDSMAE KMLANEIKEG DSVIVDVDSD
901: GNVTVLNGSS GTPSDPAPEP IPV

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.