Factsheet for Solyc03g115230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 25464976
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063352	Potato	nucleus	98.35	98.25
Solyc06g082560.1.1	Tomato	plastid	86.94	92.74
VIT_17s0000g07190.t01	Wine grape	nucleus	88.04	88.04
KRH56831	Soybean	endoplasmic reticulum	86.28	86.28
CDX73074	Canola	cytosol	69.81	85.6
CDX96531	Canola	cytosol	69.81	85.6
Bra015922.1-P	Field mustard	nucleus	85.4	85.4
KRH54672	Soybean	endoplasmic reticulum	70.47	85.26
CDX85823	Canola	nucleus	82.44	85.05
Bra003807.1-P	Field mustard	nucleus	81.67	84.35
CDX68190	Canola	nucleus	74.09	82.82
Os05t0519700-01	Rice	nucleus	82.66	82.57
TraesCS3A01G274400.1	Wheat	cytosol	82.33	82.15
Zm00001d038806_P001	Maize	nucleus	82.22	82.13
TraesCS3D01G273600.1	Wheat	cytosol	82.22	82.04
TraesCS3B01G308100.1	Wheat	cytosol	82.22	82.04
EES19828	Sorghum	nucleus	82.11	81.93
GSMUA_Achr1P13710_001	Banana	cytosol	76.29	81.67
TraesCS1D01G342100.1	Wheat	golgi	81.23	80.61
TraesCS1B01G352400.1	Wheat	cytosol, golgi	81.12	80.59
TraesCS1A01G340100.1	Wheat	nucleus	80.79	80.17
GSMUA_Achr3P16240_001	Banana	cytosol	74.86	80.05
EES01468	Sorghum	nucleus	79.91	79.56
AT4G14670.1	Thale cress	cytosol	47.97	70.14
TraesCS4B01G393100.1	Wheat	cytosol	68.28	68.88
Solyc06g011380.2.1	Tomato	cytosol, plastid	15.04	66.83
HORVU7Hr1G008950.1	Barley	cytosol, plastid	12.95	49.58
AT4G14675.1	Thale cress	cytosol	8.34	47.8
Solyc02g088610.2.1	Tomato	plastid	48.96	45.51
Solyc06g011400.2.1	Tomato	nucleus	25.03	43.1
Solyc12g042060.1.1	Tomato	plastid	39.19	38.68
Solyc03g118340.2.1	Tomato	nucleus	38.97	38.34
Solyc03g117950.2.1	Tomato	nucleus	36.33	34.34
Solyc06g011370.2.1	Tomato	plastid	7.57	23.15

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.3	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	InterPro:IPR036628	UniProt:K4BL25	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871
PANTHER:PTHR11638	PANTHER:PTHR11638:SF146	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923
EnsemblPlantsGene:Solyc03g115230.2	EnsemblPlants:Solyc03g115230.2.1	UniParc:UPI0002768793	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:65011966..65016121

Molecular Weight (calculated)

101122.0 Da

IEP (calculated)

6.018

GRAVY (calculated)

-0.388

Length

911 amino acids

Sequence
(BLAST)

001: MNPEKFTHKT NEAIAEAHEL AVSAGHAQLT PLHMALALLS DHSGIFWQAI VNAAGSEETA NGVERVFNQA KKKIPSQSPA PDQVPASTSL IKVLRRAQSL
101: QKSRGDSHLA VDLLILGLLE DSQIADLLKD SGLSAARVKS EVEKLRGKDG KKVESATGDT TFQALKTYGR DLVEQAGKLD PVIGRDEEIR RVIRILSRRT
201: KNNPVLIGEP GVGKTAVVEG LAQRIVRGDV PSNLADVRLI ALDMGALIAG AKYRGEFEER LKAVLKEVED AEGKVILFID EIHLVLGAGR TEGSMDAANL
301: FKPMLARGQL RCIGATTLEE YRKYVEKDAA FERRFQQVYV AEPSVPDTIS ILRGLKEKYE GHHGVKIQDR ALVIAAQLSA RYITGRHLPD KAIDLVDEAC
401: ANVRVQLDSQ PEEIDNLERK RIQLEVEHHA LEKEKDKASK ARLVEVRKEL DDLRDKLQPL MMRYKKEKER VDELRRLKQK RDELTYALQE AERRYDLARA
501: ADLRYGAIQE VESAIANLES STDESTMLTE TVGPDQIAEV VSRWTGIPVS RLGQNEKEKL IGLADRLHLR VVGQDQAVKA VAEAVLRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDDKLM VRIDMSEYME QHSVARLIGA PPGYVGHEEG GQLTEAVRRR PYSVVLFDEV EKAHPAVFNA LLQVLDDGRL
701: TDGQGRTVDF TNTVIIMTSN LGAEYLLSGL SGKCTMEKAR EMVMQEVRKQ FKPELLNRLD EIVVFDPLSH EQLRQVCRHQ LKDVASRLAE RGIALGVTEA
801: ALDVILAQSY DPVYGARPIR RWLEKKVVTE LSKMLVKEEI DENSTVYIDA GRGGKDLTYR VENNGGLVNA ATGQKSDVLI QLPNGPRNDA AQAVKKMRIE
901: EIDDEDDEMA D

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.