Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G74310.1 | Thale cress | nucleus | 73.35 | 50.16 |
| VIT_17s0000g07190.t01 | Wine grape | nucleus | 72.39 | 49.51 |
| Solyc06g082560.1.1 | Tomato | plastid | 67.74 | 49.41 |
| Solyc03g115230.2.1 | Tomato | plastid | 70.14 | 47.97 |
| Zm00001d038806_P001 | Maize | nucleus | 70.14 | 47.92 |
| PGSC0003DMT400063352 | Potato | nucleus | 70.14 | 47.92 |
| EES19828 | Sorghum | nucleus | 69.98 | 47.75 |
| Os05t0519700-01 | Rice | nucleus | 69.82 | 47.7 |
| TraesCS3A01G274400.1 | Wheat | cytosol | 69.5 | 47.43 |
| TraesCS3D01G273600.1 | Wheat | cytosol | 69.34 | 47.32 |
| TraesCS3B01G308100.1 | Wheat | cytosol | 69.34 | 47.32 |
| TraesCS1B01G352400.1 | Wheat | cytosol, golgi | 68.38 | 46.46 |
| TraesCS1D01G342100.1 | Wheat | golgi | 68.38 | 46.41 |
| EES01468 | Sorghum | nucleus | 68.06 | 46.34 |
| GSMUA_Achr1P13710_001 | Banana | cytosol | 63.24 | 46.3 |
| TraesCS1A01G340100.1 | Wheat | nucleus | 68.22 | 46.3 |
| GSMUA_Achr3P16240_001 | Banana | cytosol | 62.6 | 45.77 |
| TraesCS4B01G393100.1 | Wheat | cytosol | 63.08 | 43.52 |
| AT5G15450.1 | Thale cress | plastid | 48.48 | 31.2 |
| AT2G25140.1 | Thale cress | mitochondrion | 47.35 | 30.6 |
| AT3G45450.1 | Thale cress | cytosol | 15.57 | 28.45 |
| AT5G50920.1 | Thale cress | plastid | 39.65 | 26.59 |
| AT3G48870.3 | Thale cress | cytosol, plastid | 39.17 | 25.63 |
| AT5G51070.1 | Thale cress | plastid | 34.67 | 22.86 |
| AT4G14675.1 | Thale cress | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.1780.10 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:827117 | InterPro:AAA+_ATPase | ProteinID:AEE83473.1 |
| ArrayExpress:AT4G14670 | EnsemblPlantsGene:AT4G14670 | RefSeq:AT4G14670 | TAIR:AT4G14670 | RefSeq:AT4G14670-TAIR-G | EnsemblPlants:AT4G14670.1 |
| TAIR:AT4G14670.1 | InterPro:ATPase_AAA_core | Unigene:At.54318 | ProteinID:CAB46061.1 | ProteinID:CAB78509.1 | Symbol:CLPB2 |
| InterPro:ClpA/B | InterPro:Clp_N | InterPro:Clp_N_dom_sf | ncoils:Coil | UniProt:F4JVJ1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0019538 |
| InterPro:IPR036628 | RefSeq:NP_567437.1 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02861 | PFAM:PF07724 |
| PRINTS:PR00300 | PANTHER:PTHR11638 | PANTHER:PTHR11638:SF146 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF81923 |
| UniParc:UPI0000162A3C | SEG:seg | : | : | : | : |
Description
CLPB2Putative chaperone protein ClpB2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JVJ1]
Coordinates
chr4:+:8410054..8412557
Molecular Weight (calculated)
68901.6 Da
IEP (calculated)
8.558
GRAVY (calculated)
-0.231
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLKFDPNV KLILASARSH AMSLSHGQVT PLHLGVTLIS DLTSVFYRAI TSAGDGDISA QSVVNVINQS LYKLTKRNLG DTKVGVAVLV ISLLEDSQIS
101: DVLKEAGVVP EKVKSEVEKL RGEVILRALK TYGTDLVEQA GKLDPVIGRH REIRRVIEVL SRRTKNNPVL IGEPGVGKTA VVEGLAQRIL KGDVPINLTG
201: VKLISLEFGA MVAGTTLRGQ FEERLKSVLK AVEEAQGKVV LFIDEIHMAL GACKASGSTD AAKLLKPMLA RGQLRFIGAT TLEEYRTHVE KDAAFERRFQ
301: QVFVAEPSVP DTISILRGLK EKYEGHHGVR IQDRALVLSA QLSERYITGR RLPDKAIDLV DESCAHVKAQ LDIQPEEIDS LERKVMQLEI EIHALEKEKD
401: DKASEARLSE VRKELDDLRD KLEPLTIKYK KEKKIINETR RLKQNRDDLM IALQEAERQH DVPKAAVLKY GAIQEVESAI AKLEKSAKDN VMLTETVGPE
501: NIAEVVSRWT GIPVTRLDQN EKKRLISLAD KLHERVVGQD EAVKAVAAAI LRSRVGLGRP QQPSGSFLFL GPTGVGKTEL AKALAEQLFD SENLLVRLDM
601: SEYNDKFSVN KLIGAPPGYV HWS
101: DVLKEAGVVP EKVKSEVEKL RGEVILRALK TYGTDLVEQA GKLDPVIGRH REIRRVIEVL SRRTKNNPVL IGEPGVGKTA VVEGLAQRIL KGDVPINLTG
201: VKLISLEFGA MVAGTTLRGQ FEERLKSVLK AVEEAQGKVV LFIDEIHMAL GACKASGSTD AAKLLKPMLA RGQLRFIGAT TLEEYRTHVE KDAAFERRFQ
301: QVFVAEPSVP DTISILRGLK EKYEGHHGVR IQDRALVLSA QLSERYITGR RLPDKAIDLV DESCAHVKAQ LDIQPEEIDS LERKVMQLEI EIHALEKEKD
401: DKASEARLSE VRKELDDLRD KLEPLTIKYK KEKKIINETR RLKQNRDDLM IALQEAERQH DVPKAAVLKY GAIQEVESAI AKLEKSAKDN VMLTETVGPE
501: NIAEVVSRWT GIPVTRLDQN EKKRLISLAD KLHERVVGQD EAVKAVAAAI LRSRVGLGRP QQPSGSFLFL GPTGVGKTEL AKALAEQLFD SENLLVRLDM
601: SEYNDKFSVN KLIGAPPGYV HWS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.